Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31717
         (352 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      23   1.4  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    22   2.4  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    21   5.6  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    21   5.6  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       20   9.8  

>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 22.6 bits (46), Expect = 1.4
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -3

Query: 212 GLKYEFLKSEVEGNELMEDN 153
           G+K   + S+VEGN + E+N
Sbjct: 214 GVKNNHVSSKVEGNGVHEEN 233


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 21.8 bits (44), Expect = 2.4
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -3

Query: 167 LMEDNRSSFFRPMPKCWSSSL 105
           L   N ++FFR M + W ++L
Sbjct: 338 LTRQNPAAFFRGMMQAWMTAL 358


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 20.6 bits (41), Expect = 5.6
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -1

Query: 94  RCAPSHPTSRETSL 53
           RC+PS+P+   T L
Sbjct: 332 RCSPSNPSITRTGL 345


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 20.6 bits (41), Expect = 5.6
 Identities = 11/41 (26%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +3

Query: 156 ILHQFIPLDLALQKFILQTLEGE-LSQTGIFFDDQLDEREI 275
           +LH   P D+A + ++ +T+E +   +  + F D +   EI
Sbjct: 463 LLHLIFPPDIAKRLWLGETIEAKTYPEVTMLFSDIVGFTEI 503


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 19.8 bits (39), Expect = 9.8
 Identities = 7/8 (87%), Positives = 8/8 (100%)
 Frame = +3

Query: 249 DDQLDERE 272
           DDQ+DERE
Sbjct: 694 DDQVDERE 701


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 85,352
Number of Sequences: 438
Number of extensions: 1537
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8060325
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)