Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31716
         (516 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    23   2.1  
EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetyla...    21   8.6  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    21   8.6  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    21   8.6  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    21   8.6  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    21   8.6  

>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 22.6 bits (46), Expect = 2.1
 Identities = 8/36 (22%), Positives = 18/36 (50%)
 Frame = -1

Query: 174 NPYLATILSHCVPFPXPGPPRTHTIGFFDVPMGAIV 67
           NP   ++++   P+P  G  R   +G+    +G ++
Sbjct: 376 NPEYISVVNPESPYPQIGSERATPVGYHQNEVGGVI 411


>EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetylase
           1 protein.
          Length = 534

 Score = 20.6 bits (41), Expect = 8.6
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = +1

Query: 238 MPYRYYGKRRACP 276
           MP+R +G  ++CP
Sbjct: 345 MPHRCHGNLQSCP 357


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
            variant 2 protein.
          Length = 1558

 Score = 20.6 bits (41), Expect = 8.6
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +2

Query: 428  EASSETLTHRLLGRAASSGRADDNE 502
            EA  +     LLG   S G +DD+E
Sbjct: 1082 EAKRKAKQKSLLGFLQSGGTSDDDE 1106


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
            variant 1 protein.
          Length = 1558

 Score = 20.6 bits (41), Expect = 8.6
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +2

Query: 428  EASSETLTHRLLGRAASSGRADDNE 502
            EA  +     LLG   S G +DD+E
Sbjct: 1082 EAKRKAKQKSLLGFLQSGGTSDDDE 1106


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase CHS1B
            protein.
          Length = 1558

 Score = 20.6 bits (41), Expect = 8.6
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +2

Query: 428  EASSETLTHRLLGRAASSGRADDNE 502
            EA  +     LLG   S G +DD+E
Sbjct: 1082 EAKRKAKQKSLLGFLQSGGTSDDDE 1106


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase CHS1A
            protein.
          Length = 1558

 Score = 20.6 bits (41), Expect = 8.6
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +2

Query: 428  EASSETLTHRLLGRAASSGRADDNE 502
            EA  +     LLG   S G +DD+E
Sbjct: 1082 EAKRKAKQKSLLGFLQSGGTSDDDE 1106


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 111,175
Number of Sequences: 336
Number of extensions: 2319
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12363686
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)