Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31716
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1795.05c |||uridylate kinase|Schizosaccharomyces pombe|chr 3...   116   2e-27
SPAC4G9.03 |adk1||adenylate kinase Adk1|Schizosaccharomyces pomb...    89   4e-19
SPAC4G9.12 |||gluconokinase|Schizosaccharomyces pombe|chr 1|||Ma...    31   0.10 
SPAC10F6.02c |prp22||ATP-dependent RNA helicase Prp22|Schizosacc...    29   0.31 
SPAC227.14 |||nicotinamide riboside kinase|Schizosaccharomyces p...    27   1.3  
SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosacc...    26   2.9  
SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|...    25   5.1  
SPBC16D10.10 |||tRNA specific adenosine deaminase subunit Tad2 |...    25   5.1  
SPAPB1E7.03 |rpc82||DNA-directed RNA polymerase III complex subu...    25   5.1  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    25   5.1  
SPCC188.06c |srp54||signal recognition particle subunit Srp54|Sc...    25   6.7  
SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces...    25   8.9  
SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex ...    25   8.9  

>SPCC1795.05c |||uridylate kinase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 191

 Score =  116 bits (280), Expect = 2e-27
 Identities = 57/141 (40%), Positives = 87/141 (61%), Gaps = 3/141 (2%)
 Frame = +2

Query: 101 IVWVLGGPGSGKGTQCDKIVAKYG-FTHLSTGDLLXAEV-KSGSERAKCLTAIMERGELV 274
           +++VLGGPG+GKGTQCD++  K+  F H+S GD L  E  + GS+    +   ++ G++V
Sbjct: 4   VIFVLGGPGAGKGTQCDRLAEKFDKFVHISAGDCLREEQNRPGSKYGNLIKEYIKDGKIV 63

Query: 275 PNEIVLDLLKEAILARAEES-KGFLIDGYPREKSQGXAFEENIAPVSVIIYFEASSETLT 451
           P EI + LL+  +    ++    FLIDG+PRE  Q   FE+++ P    +YF    ET+ 
Sbjct: 64  PMEITISLLETKMKECHDKGIDKFLIDGFPREMDQCEGFEKSVCPAKFALYFRCGQETML 123

Query: 452 HRLLGRAASSGRADDNEETXK 514
            RL+ R  +SGR+DDN E+ K
Sbjct: 124 KRLIHRGKTSGRSDDNIESIK 144


>SPAC4G9.03 |adk1||adenylate kinase Adk1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 220

 Score = 89.0 bits (211), Expect = 4e-19
 Identities = 46/129 (35%), Positives = 71/129 (55%), Gaps = 4/129 (3%)
 Frame = +2

Query: 110 VLGGPGSGKGTQCDKIVAKYGFTHLSTGDLLXAEVKSGSERAKCLTAIMERGELVPNEIV 289
           ++G PG+GKGTQ   I  KYG  HL+TGD+L ++V   +E  K    IM++G LV ++IV
Sbjct: 8   LVGPPGAGKGTQAPNIQKKYGIAHLATGDMLRSQVARQTELGKEAKKIMDQGGLVSDDIV 67

Query: 290 LDLLKEAILARAEESKGFLIDGYPREKSQG----XAFEENIAPVSVIIYFEASSETLTHR 457
             ++K+ IL   E   GF++DG+PR   Q        +E    ++ ++  +   E L  R
Sbjct: 68  TGMIKDEILNNPECKNGFILDGFPRTVVQAEKLTALLDELKLDLNTVLELQVDDELLVRR 127

Query: 458 LLGRAASSG 484
           + GR    G
Sbjct: 128 ITGRLVHPG 136


>SPAC4G9.12 |||gluconokinase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 193

 Score = 31.1 bits (67), Expect = 0.10
 Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
 Frame = +2

Query: 68  TMAPIGTSKKPI--VWVLGGP-GSGKGTQCDKIVAKYGFTHLSTGDL 199
           T+ PI  + +P   V+V+ GP GSGK T    +  K GF ++   DL
Sbjct: 2   TVTPINPTNQPYKYVFVVIGPAGSGKTTMAKAVSEKLGFEYIEGDDL 48


>SPAC10F6.02c |prp22||ATP-dependent RNA helicase
           Prp22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1168

 Score = 29.5 bits (63), Expect = 0.31
 Identities = 14/30 (46%), Positives = 20/30 (66%)
 Frame = +2

Query: 89  SKKPIVWVLGGPGSGKGTQCDKIVAKYGFT 178
           SK  I+ +LG  GSGK TQ  + +A+ G+T
Sbjct: 524 SKNQILVLLGETGSGKTTQITQYLAEEGYT 553


>SPAC227.14 |||nicotinamide riboside kinase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 235

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = +2

Query: 92  KKPIVWVLGGPGSGKGTQCDKIVAK 166
           ++ ++ + GGPGSGK T C  I+AK
Sbjct: 28  QRVLIGLAGGPGSGKSTLC-AILAK 51


>SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein
           Bms1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1121

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +2

Query: 101 IVWVLGGPGSGKGTQCDKIVAKY 169
           IV V+G PG+GK T    +V +Y
Sbjct: 76  IVAVMGPPGTGKSTLIKSLVRRY 98


>SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1234

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 15/61 (24%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
 Frame = +2

Query: 137 GTQCDKIVAKYGFTHLSTGDLLXAEVKSGSERAKCLTAIMERGELVPNEI--VLDLLKEA 310
           G   +KI++   + + S         K    R++C   ++  GEL+PN +  + D L+  
Sbjct: 589 GVVLEKIISAVTYDNTSASYGFSDVQKINEMRSRCCFELVRLGELMPNPLMNIFDQLQSI 648

Query: 311 I 313
           I
Sbjct: 649 I 649


>SPBC16D10.10 |||tRNA specific adenosine deaminase subunit Tad2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 367

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +2

Query: 92  KKPIVWVLGGPGSGKGTQCDKIVAK 166
           K  I+ + GGP SGK   C++++ +
Sbjct: 7   KSAIIGIAGGPFSGKTQLCEQLLER 31


>SPAPB1E7.03 |rpc82||DNA-directed RNA polymerase III complex subunit
           Rpc82 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 591

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +3

Query: 192 ETCSXLKSKAARRGRNALPLLWKEASL 272
           + CS + S   R GR  +P+L K  SL
Sbjct: 19  DCCSAVASALLRHGRLTIPMLQKRTSL 45


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 3/35 (8%)
 Frame = -1

Query: 174 NPYLATILSHCVP---FPXPGPPRTHTIGFFDVPM 79
           +PY AT  SH  P    P P P  + T G+ D PM
Sbjct: 834 SPY-ATTSSHITPADVHPLPPPSTSTTAGWNDAPM 867


>SPCC188.06c |srp54||signal recognition particle subunit
           Srp54|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 522

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +2

Query: 101 IVWVLGGPGSGKGTQCDKIVAKY 169
           ++ ++G  GSGK T C K+   Y
Sbjct: 103 VIMMVGLQGSGKTTTCSKLALHY 125


>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1485

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +2

Query: 89   SKKPIVWVLGGPGSGKGTQCDKIVAKYGFTHLSTGDLLXAEVK 217
            SKKP+  +     SG+G + +K VA   F+     DLL + +K
Sbjct: 1335 SKKPVKKIAAS-ASGRGRKTNKPVATTIFSSDDEDDLLPSSLK 1376


>SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex
           subunit Orp3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 690

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 13/45 (28%), Positives = 20/45 (44%)
 Frame = +2

Query: 146 CDKIVAKYGFTHLSTGDLLXAEVKSGSERAKCLTAIMERGELVPN 280
           C  I+       L+  D L   + +G++  KCL    E  EL+ N
Sbjct: 414 CQAILRMNSTKALACLDYLNENIFTGNQTMKCLEIHQELSELIRN 458


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,943,745
Number of Sequences: 5004
Number of extensions: 37921
Number of successful extensions: 122
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)