Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31716
         (516 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33375| Best HMM Match : ADK (HMM E-Value=1.6e-30)                  115   3e-26
SB_13785| Best HMM Match : No HMM Matches (HMM E-Value=.)              80   1e-15
SB_58530| Best HMM Match : No HMM Matches (HMM E-Value=.)              79   2e-15
SB_19245| Best HMM Match : ADK (HMM E-Value=0)                         77   9e-15
SB_28550| Best HMM Match : Fer2_2 (HMM E-Value=2.49992e-42)            46   2e-05
SB_33720| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   7e-04
SB_31065| Best HMM Match : ADK (HMM E-Value=1.5e-31)                   38   0.005
SB_379| Best HMM Match : ADK (HMM E-Value=3.2e-05)                     35   0.035
SB_4186| Best HMM Match : ADK (HMM E-Value=0.094)                      35   0.046
SB_43624| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.56 
SB_16493| Best HMM Match : NACHT (HMM E-Value=1.1e-08)                 30   0.98 
SB_43601| Best HMM Match : ADK (HMM E-Value=2.3e-05)                   30   0.98 
SB_35426| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_19504| Best HMM Match : FH2 (HMM E-Value=1.2e-30)                   27   9.2  
SB_18188| Best HMM Match : SRP54 (HMM E-Value=0)                       27   9.2  
SB_26671| Best HMM Match : zf-TRAF (HMM E-Value=0.54)                  27   9.2  

>SB_33375| Best HMM Match : ADK (HMM E-Value=1.6e-30)
          Length = 297

 Score =  115 bits (276), Expect = 3e-26
 Identities = 53/102 (51%), Positives = 72/102 (70%)
 Frame = +2

Query: 89  SKKPIVWVLGGPGSGKGTQCDKIVAKYGFTHLSTGDLLXAEVKSGSERAKCLTAIMERGE 268
           S + IV++LGGPG+GKGT CD +V KY + HLS GDLL  EV  G+ER + +T +M  G+
Sbjct: 114 SGQRIVYILGGPGAGKGTICDSVVKKYNYCHLSAGDLLREEVTRGNERGQMITEMMREGK 173

Query: 269 LVPNEIVLDLLKEAILARAEESKGFLIDGYPREKSQGXAFEE 394
           LVP EI + LL++A +   ++  GFLIDG+PR+  QG  FEE
Sbjct: 174 LVPKEITIGLLQDA-MREHKDMPGFLIDGFPRDIDQGITFEE 214



 Score = 52.8 bits (121), Expect = 2e-07
 Identities = 21/59 (35%), Positives = 33/59 (55%)
 Frame = +2

Query: 104 VWVLGGPGSGKGTQCDKIVAKYGFTHLSTGDLLXAEVKSGSERAKCLTAIMERGELVPN 280
           +W  GGP +GK T C  +  ++ +TH+  G L+  E +  ++RAK L   +  G  VPN
Sbjct: 239 IWSKGGPATGKKTHCKHVAERFNYTHIMPGTLVAQEAQKDTDRAKQLIQTISAGNDVPN 297


>SB_13785| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 386

 Score = 79.8 bits (188), Expect = 1e-15
 Identities = 37/116 (31%), Positives = 64/116 (55%)
 Frame = +2

Query: 101 IVWVLGGPGSGKGTQCDKIVAKYGFTHLSTGDLLXAEVKSGSERAKCLTAIMERGELVPN 280
           I++++GGPGSGK     ++    G THLS G LL  E    ++R + +   +  G LV  
Sbjct: 136 IMFIVGGPGSGKAELAKRLAESSGRTHLSMGQLLKEEATKDTDRGREVAQAIAMGTLVSP 195

Query: 281 EIVLDLLKEAILARAEESKGFLIDGYPREKSQGXAFEENIAPVSVIIYFEASSETL 448
           E  L++L E I++  +  +G+++DG+PR   Q   F E ++  + ++  E S E +
Sbjct: 196 EHALNILTEKIVSDEKNLEGYVVDGFPRSHEQAKNFTEKVSDFNRVVALECSDEEM 251



 Score = 78.2 bits (184), Expect = 4e-15
 Identities = 37/75 (49%), Positives = 53/75 (70%)
 Frame = +2

Query: 284 IVLDLLKEAILARAEESKGFLIDGYPREKSQGXAFEENIAPVSVIIYFEASSETLTHRLL 463
           I+L+LL+ A++ +   + GFLIDG+PRE  QG  FE+ +A   +++YFE S +T+  RLL
Sbjct: 2   IILELLRLAMV-KQPNTTGFLIDGFPRELEQGLEFEKELALCELLLYFECSPDTMKARLL 60

Query: 464 GRAASSGRADDNEET 508
            R  +SGR DDNEET
Sbjct: 61  KRGETSGRVDDNEET 75



 Score = 42.7 bits (96), Expect = 2e-04
 Identities = 22/47 (46%), Positives = 33/47 (70%), Gaps = 1/47 (2%)
 Frame = +2

Query: 101 IVWVLGGPGSGKGTQCDKIVAK-YGFTHLSTGDLLXAEVKSGSERAK 238
           IV+++GGPGSGK T+  K++A+  G TH+S G LL  E    ++RA+
Sbjct: 340 IVFIVGGPGSGK-TELAKLLAESSGRTHISMGQLLKEEATKDTDRAR 385


>SB_58530| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 288

 Score = 79.4 bits (187), Expect = 2e-15
 Identities = 41/117 (35%), Positives = 67/117 (57%), Gaps = 1/117 (0%)
 Frame = +2

Query: 101 IVWVLGGPGSGKGTQCDKIVAK-YGFTHLSTGDLLXAEVKSGSERAKCLTAIMERGELVP 277
           +++V+GGPGSGK T+  K++A+  G TH+S G LL  E    ++RA+ +   +  G LV 
Sbjct: 106 VIFVIGGPGSGK-TELAKLLAESSGRTHISMGQLLKEEATKDTDRAREVARAIGMGTLVS 164

Query: 278 NEIVLDLLKEAILARAEESKGFLIDGYPREKSQGXAFEENIAPVSVIIYFEASSETL 448
            E  L +L E I+   +   G+++DGYPR   Q   F E ++  + ++  E S E +
Sbjct: 165 PEHALGILSETIVRGEKNLGGYVVDGYPRSHEQAKNFTEKVSDFNRVVALECSDEEM 221


>SB_19245| Best HMM Match : ADK (HMM E-Value=0)
          Length = 188

 Score = 77.0 bits (181), Expect = 9e-15
 Identities = 46/129 (35%), Positives = 74/129 (57%), Gaps = 3/129 (2%)
 Frame = +2

Query: 110 VLGGPGSGKGTQCDKIVAKYGFTHLSTGDLLXAEVKSGSERAKCLTAIMERGELVPNEIV 289
           ++G PGSGKGT  ++IV  +G  HLS+G+LL   V++ ++  +   A + +GELVP+E++
Sbjct: 36  IMGPPGSGKGTVSERIVRDFGVEHLSSGELLRHHVQNHTDLGEEAQAYILKGELVPDELM 95

Query: 290 LDLLKEAILARAEESKG-FLIDGYPREKSQGXAFEENIAPVSVIIYFEASSETLTHRLLG 466
           +DL    IL   +  KG +L+DG+PR   Q     E    + V++  +    T+  R+  
Sbjct: 96  VDL----ILHELDAKKGNWLLDGFPRTVGQAETLSEK-HKIDVVVNMDVPFATIVDRIKQ 150

Query: 467 R--AASSGR 487
           R   A SGR
Sbjct: 151 RWVHAVSGR 159


>SB_28550| Best HMM Match : Fer2_2 (HMM E-Value=2.49992e-42)
          Length = 1644

 Score = 45.6 bits (103), Expect = 2e-05
 Identities = 23/70 (32%), Positives = 39/70 (55%), Gaps = 3/70 (4%)
 Frame = +2

Query: 314 LARAEESKGFLIDGYPREKSQGXAFEENI---APVSVIIYFEASSETLTHRLLGRAASSG 484
           +A+++  K FLIDG+PR +     +E  +     V  +++FE   +    R++ R  SSG
Sbjct: 2   MAKSDVQK-FLIDGFPRNEDNLQGWESRMNDKVDVKAVLFFECPEDICIGRIMSRGQSSG 60

Query: 485 RADDNEETXK 514
           R DDN E+ +
Sbjct: 61  RPDDNIESLR 70


>SB_33720| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 124

 Score = 34.7 bits (76), Expect(2) = 7e-04
 Identities = 19/71 (26%), Positives = 38/71 (53%), Gaps = 4/71 (5%)
 Frame = +2

Query: 266 ELVPNEIVLDLLKEAILARAEESKGFLIDGYPREKSQG----XAFEENIAPVSVIIYFEA 433
           +LV +++V++L+ +  L + E   G+L+DG+PR  +Q        E+  A +  ++ F  
Sbjct: 54  QLVSDDLVVELIDDN-LTKPECQNGWLLDGFPRTVAQAEKLDGLLEKRNAQLDAVVEFNI 112

Query: 434 SSETLTHRLLG 466
           +   L  R+ G
Sbjct: 113 ADSLLVKRITG 123



 Score = 25.4 bits (53), Expect(2) = 7e-04
 Identities = 10/12 (83%), Positives = 11/12 (91%)
 Frame = +2

Query: 110 VLGGPGSGKGTQ 145
           +LG PGSGKGTQ
Sbjct: 43  LLGPPGSGKGTQ 54


>SB_31065| Best HMM Match : ADK (HMM E-Value=1.5e-31)
          Length = 166

 Score = 37.9 bits (84), Expect = 0.005
 Identities = 25/84 (29%), Positives = 43/84 (51%), Gaps = 6/84 (7%)
 Frame = +2

Query: 269 LVPNEIVLDLLKEAILARAEESKGFLIDGYPREKSQG----XAFEENIAPVSVIIYFEAS 436
           LV +++V++L+ +  L + E   G+L+DG+PR  +Q        E+  A +  ++ F  +
Sbjct: 1   LVSDDLVVELIDDN-LTKPECQNGWLLDGFPRTVAQAEKLDGLLEKRNAQLDAVVEFNIA 59

Query: 437 SETLTHRLLGRA--ASSGRADDNE 502
              L  R+ GR    SSGR    E
Sbjct: 60  DSLLVKRITGRLLHKSSGRTYHTE 83


>SB_379| Best HMM Match : ADK (HMM E-Value=3.2e-05)
          Length = 991

 Score = 35.1 bits (77), Expect = 0.035
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = +2

Query: 251 IMERGELVPNEIVLDLLKEAILARAEESKGFLIDGYP 361
           I+ RGE +P E+V  LL E + +      G+++DG+P
Sbjct: 16  ILLRGEAIPEELVTKLLIEKVYSPETAHHGYILDGFP 52


>SB_4186| Best HMM Match : ADK (HMM E-Value=0.094)
          Length = 1053

 Score = 34.7 bits (76), Expect = 0.046
 Identities = 15/40 (37%), Positives = 24/40 (60%)
 Frame = +2

Query: 101 IVWVLGGPGSGKGTQCDKIVAKYGFTHLSTGDLLXAEVKS 220
           +V + GGPGS KG+  + +V  +GF  +S  DL+   + S
Sbjct: 663 VVIMFGGPGSTKGSIINDLVKMFGFVFISAEDLILKNLPS 702


>SB_43624| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1018

 Score = 31.1 bits (67), Expect = 0.56
 Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
 Frame = +2

Query: 89  SKKPIVWVLGGPGSGKGTQCDKIVAKYGFTHLSTGDL--LXAEVKSGS-ERAKCLTAIM 256
           SK P   V+  PGSG GT  D+ V K   +  S+GD   + A +K  + +  K LT+++
Sbjct: 343 SKPPPTGVMPTPGSGPGTSFDQCVFKTDLSKGSSGDTFEMSAFIKEETVQIGKALTSLV 401


>SB_16493| Best HMM Match : NACHT (HMM E-Value=1.1e-08)
          Length = 833

 Score = 30.3 bits (65), Expect = 0.98
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = +2

Query: 104 VWVLGGPGSGKGTQCDKIVAKY 169
           V V GGPGSGK T C ++V ++
Sbjct: 59  VLVEGGPGSGKTTMCQRLVQEW 80


>SB_43601| Best HMM Match : ADK (HMM E-Value=2.3e-05)
          Length = 712

 Score = 30.3 bits (65), Expect = 0.98
 Identities = 12/38 (31%), Positives = 24/38 (63%)
 Frame = +2

Query: 272 VPNEIVLDLLKEAILARAEESKGFLIDGYPREKSQGXA 385
           VP+++VL LL + +      +KG+++ G+P+ + Q  A
Sbjct: 325 VPDDLVLQLLHQRMSRLDAVTKGWVLHGFPKTREQAEA 362


>SB_35426| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 533

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
 Frame = +3

Query: 183 SRLETCSXLKSKAARRGRNALPLLWKEASLSLMKSSWIC*KKRSW-PVLKNPKASSS 350
           ++L   S      A  GR      WK  SLS+ K  WI    R    ++KNP++ S+
Sbjct: 221 AKLTASSSQSGFPASSGRLLGASAWKPVSLSIDKEPWIMTGNRDQNTIIKNPQSMSA 277


>SB_19504| Best HMM Match : FH2 (HMM E-Value=1.2e-30)
          Length = 739

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 15/51 (29%), Positives = 22/51 (43%)
 Frame = +3

Query: 117 EVPXQEREHNATRSSPNTGSLTSRLETCSXLKSKAARRGRNALPLLWKEAS 269
           +VP +       R+SP  G+   RL+      +K  R  RN   L+W   S
Sbjct: 686 KVPRKPDSQERERASPKLGTKCGRLDPGEHDANKVMRFRRNESVLVWTAGS 736


>SB_18188| Best HMM Match : SRP54 (HMM E-Value=0)
          Length = 410

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 28/106 (26%), Positives = 45/106 (42%), Gaps = 5/106 (4%)
 Frame = +2

Query: 92  KKPIVWVLGGPGSGKGTQCDKIVAKY---GF-THLSTGDLLXAEVKSGSERAKCLTAIME 259
           KK ++  +G  GSGK T C K+   Y   G+ T L   D   A      ++      I  
Sbjct: 15  KKNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPF 74

Query: 260 RGELVPNEIVLDLLKEAILARAEES-KGFLIDGYPREKSQGXAFEE 394
            G     + V+ + +E +    EE+ +  ++D   R K +   FEE
Sbjct: 75  YGSYTETDPVI-IAQEGVEKFKEENFEIIIVDTSGRHKQEESLFEE 119


>SB_26671| Best HMM Match : zf-TRAF (HMM E-Value=0.54)
          Length = 901

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
 Frame = -1

Query: 498 LSSARPELAARPSRRCVSVS---EEASKYIITETGAMFSSKAIP 376
           LSS +P+ +  P + CV  S   ++  +  +T+ GA F  K  P
Sbjct: 423 LSSTKPDSSGIPPKNCVDESGSDDDLMRPALTQAGAKFMVKTEP 466


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,070,023
Number of Sequences: 59808
Number of extensions: 317915
Number of successful extensions: 844
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 788
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 833
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)