Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31716
         (516 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ439353-3|CAD27925.1| 1200|Anopheles gambiae putative TPR-conta...    25   2.0  
AJ271193-1|CAB66001.1| 1623|Anopheles gambiae laminin gamma 1 pr...    24   2.6  
AB090820-2|BAC57916.1| 1222|Anopheles gambiae reverse transcript...    24   2.6  

>AJ439353-3|CAD27925.1| 1200|Anopheles gambiae putative
           TPR-containing phosphoprotein protein.
          Length = 1200

 Score = 24.6 bits (51), Expect = 2.0
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +3

Query: 267 SLSLMKSSWIC*KKRSWPVLKNPKASSSTATL 362
           +L L K  W   +K    +LKNP  SS   +L
Sbjct: 572 NLHLAKMQWTLGQKNFETILKNPATSSDAYSL 603


>AJ271193-1|CAB66001.1| 1623|Anopheles gambiae laminin gamma 1
           precursor protein.
          Length = 1623

 Score = 24.2 bits (50), Expect = 2.6
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +1

Query: 55  FNFINNGTHRYIEKANRVGPGRSRXRKGNTMRQD 156
           +N   +G H     ANR GP   R ++   MR+D
Sbjct: 358 YNLTGHGGHCIDCGANRDGPNCERCKENFFMRED 391


>AB090820-2|BAC57916.1| 1222|Anopheles gambiae reverse transcriptase
            protein.
          Length = 1222

 Score = 24.2 bits (50), Expect = 2.6
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -2

Query: 440  PRRPRSILSPKQERCSLQKXYPVTSREGS 354
            P  PR++ +  + R  LQ+ Y   +REG+
Sbjct: 1127 PPSPRTVRARHERRLYLQRLYRQRAREGT 1155


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 492,745
Number of Sequences: 2352
Number of extensions: 9638
Number of successful extensions: 16
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 563,979
effective HSP length: 60
effective length of database: 422,859
effective search space used: 46937349
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)