Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31716
(516 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g26667.2 68418.m03158 uridylate kinase / uridine monophosphat... 136 1e-32
At5g26667.1 68418.m03157 uridylate kinase / uridine monophosphat... 136 1e-32
At3g60180.2 68416.m06721 uridylate kinase, putative / uridine mo... 121 3e-28
At3g60180.1 68416.m06720 uridylate kinase, putative / uridine mo... 121 3e-28
At4g25280.1 68417.m03636 adenylate kinase family protein contain... 114 3e-26
At5g47840.1 68418.m05911 adenylate kinase, chloroplast, putative... 112 1e-25
At5g35170.1 68418.m04168 adenylate kinase family protein contain... 100 7e-22
At2g37250.1 68415.m04570 adenylate kinase family protein contain... 83 8e-17
At5g63400.1 68418.m07958 adenylate kinase identical to adenylate... 81 6e-16
At5g50370.1 68418.m06238 adenylate kinase, putative similar to a... 81 6e-16
At2g39270.1 68415.m04822 adenylate kinase family protein contain... 80 1e-15
At3g01820.1 68416.m00124 adenylate kinase family protein contain... 53 1e-07
At1g27900.1 68414.m03419 RNA helicase, putative similar to SP|Q1... 31 0.35
At2g39730.3 68415.m04879 ribulose bisphosphate carboxylase/oxyge... 30 0.80
At2g39730.2 68415.m04878 ribulose bisphosphate carboxylase/oxyge... 30 0.80
At2g39730.1 68415.m04877 ribulose bisphosphate carboxylase/oxyge... 30 0.80
At2g35340.1 68415.m04333 RNA helicase, putative similar to ATP-d... 29 1.4
At5g01310.1 68418.m00043 basic helix-loop-helix (bHLH) family pr... 29 2.5
At4g25120.1 68417.m03614 UvrD/REP helicase family protein contai... 29 2.5
At1g32490.1 68414.m04009 RNA helicase, putative similar to ATP-d... 29 2.5
At1g33240.1 68414.m04108 trihelix DNA-binding protein, putative ... 27 5.7
At5g42970.1 68418.m05241 COP9 signalosome complex subunit 4 / CS... 27 7.5
At5g40870.1 68418.m04963 uracil phosphoribosyltransferase, putat... 27 7.5
At3g55110.1 68416.m06120 ABC transporter family protein ATP-bind... 27 7.5
At2g17110.1 68415.m01974 expressed protein 27 7.5
At1g51500.1 68414.m05796 ABC transporter family protein similar ... 27 7.5
At5g60340.1 68418.m07564 maoC-like dehydratase domain-containing... 27 9.9
At5g14400.1 68418.m01682 cytochrome P450 family protein similar ... 27 9.9
At5g13580.1 68418.m01570 ABC transporter family protein 27 9.9
At3g21090.1 68416.m02666 ABC transporter family protein similar ... 27 9.9
At1g19290.1 68414.m02398 pentatricopeptide (PPR) repeat-containi... 27 9.9
>At5g26667.2 68418.m03158 uridylate kinase / uridine monophosphate
kinase / UMP kinase (PYR6) identical to uridylate kinase
/ UMP/CMP kinase SP:O04905 from [Arabidopsis thaliana]
Length = 202
Score = 136 bits (328), Expect = 1e-32
Identities = 70/147 (47%), Positives = 98/147 (66%), Gaps = 3/147 (2%)
Frame = +2
Query: 83 GTSKKP-IVWVLGGPGSGKGTQCDKIVAKYGFTHLSTGDLLXAEVKSGSERAKCLTAIME 259
G+ KKP +++VLGGPGSGKGTQC IV YG+THLS GDLL AE+KSGSE + +++
Sbjct: 9 GSGKKPTVIFVLGGPGSGKGTQCAYIVEHYGYTHLSAGDLLRAEIKSGSENGTMIQNMIK 68
Query: 260 RGELVPNEIVLDLLKEAILARAEESKGFLIDGYPREKSQGXAFEE--NIAPVSVIIYFEA 433
G++VP+E+ + LL++AI + FLIDG+PR + AFE+ I P +++F+
Sbjct: 69 EGKIVPSEVTIKLLQKAIQENGNDK--FLIDGFPRNEENRAAFEKVTEIEP-KFVLFFDC 125
Query: 434 SSETLTHRLLGRAASSGRADDNEETXK 514
E + RLLGR + GR DDN ET +
Sbjct: 126 PEEEMEKRLLGR--NQGREDDNIETIR 150
>At5g26667.1 68418.m03157 uridylate kinase / uridine monophosphate
kinase / UMP kinase (PYR6) identical to uridylate kinase
/ UMP/CMP kinase SP:O04905 from [Arabidopsis thaliana]
Length = 208
Score = 136 bits (328), Expect = 1e-32
Identities = 70/147 (47%), Positives = 98/147 (66%), Gaps = 3/147 (2%)
Frame = +2
Query: 83 GTSKKP-IVWVLGGPGSGKGTQCDKIVAKYGFTHLSTGDLLXAEVKSGSERAKCLTAIME 259
G+ KKP +++VLGGPGSGKGTQC IV YG+THLS GDLL AE+KSGSE + +++
Sbjct: 9 GSGKKPTVIFVLGGPGSGKGTQCAYIVEHYGYTHLSAGDLLRAEIKSGSENGTMIQNMIK 68
Query: 260 RGELVPNEIVLDLLKEAILARAEESKGFLIDGYPREKSQGXAFEE--NIAPVSVIIYFEA 433
G++VP+E+ + LL++AI + FLIDG+PR + AFE+ I P +++F+
Sbjct: 69 EGKIVPSEVTIKLLQKAIQENGNDK--FLIDGFPRNEENRAAFEKVTEIEP-KFVLFFDC 125
Query: 434 SSETLTHRLLGRAASSGRADDNEETXK 514
E + RLLGR + GR DDN ET +
Sbjct: 126 PEEEMEKRLLGR--NQGREDDNIETIR 150
>At3g60180.2 68416.m06721 uridylate kinase, putative / uridine
monophosphate kinase, putative / UMP kinase, putative
similar to uridylate kinase (EC 2.7.4.-) (UK) (Uridine
monophosphate kinase) (UMP kinase) (UMP/CMP kinase)
(Swiss-Prot:O04905) [Arabidopsis thaliana]
Length = 204
Score = 121 bits (291), Expect = 3e-28
Identities = 62/143 (43%), Positives = 90/143 (62%), Gaps = 2/143 (1%)
Frame = +2
Query: 92 KKPIVWVLGGPGSGKGTQCDKIVAKYGFTHLSTGDLLXAEVKSGSERAKCLTAIMERGEL 271
K +V+VLGGPGSGKGTQC +V + +TH S GDLL AE+KSGSE + +++ G +
Sbjct: 20 KSTVVFVLGGPGSGKGTQCANVVKHFSYTHFSAGDLLRAEIKSGSEFGAMIQSMIAEGRI 79
Query: 272 VPNEIVLDLLKEAILARAEESKGFLIDGYPREKSQGXAFEENIAPV--SVIIYFEASSET 445
VP+EI + LL +A+ + FLIDG+PR + F EN+A + + +++F+ E
Sbjct: 80 VPSEITVKLLCKAMEESGNDK--FLIDGFPRNEENRNVF-ENVARIEPAFVLFFDCPEEE 136
Query: 446 LTHRLLGRAASSGRADDNEETXK 514
L R++ R + GR DDN ET K
Sbjct: 137 LERRIMSR--NQGREDDNIETIK 157
>At3g60180.1 68416.m06720 uridylate kinase, putative / uridine
monophosphate kinase, putative / UMP kinase, putative
similar to uridylate kinase (EC 2.7.4.-) (UK) (Uridine
monophosphate kinase) (UMP kinase) (UMP/CMP kinase)
(Swiss-Prot:O04905) [Arabidopsis thaliana]
Length = 204
Score = 121 bits (291), Expect = 3e-28
Identities = 62/143 (43%), Positives = 90/143 (62%), Gaps = 2/143 (1%)
Frame = +2
Query: 92 KKPIVWVLGGPGSGKGTQCDKIVAKYGFTHLSTGDLLXAEVKSGSERAKCLTAIMERGEL 271
K +V+VLGGPGSGKGTQC +V + +TH S GDLL AE+KSGSE + +++ G +
Sbjct: 20 KSTVVFVLGGPGSGKGTQCANVVKHFSYTHFSAGDLLRAEIKSGSEFGAMIQSMIAEGRI 79
Query: 272 VPNEIVLDLLKEAILARAEESKGFLIDGYPREKSQGXAFEENIAPV--SVIIYFEASSET 445
VP+EI + LL +A+ + FLIDG+PR + F EN+A + + +++F+ E
Sbjct: 80 VPSEITVKLLCKAMEESGNDK--FLIDGFPRNEENRNVF-ENVARIEPAFVLFFDCPEEE 136
Query: 446 LTHRLLGRAASSGRADDNEETXK 514
L R++ R + GR DDN ET K
Sbjct: 137 LERRIMSR--NQGREDDNIETIK 157
>At4g25280.1 68417.m03636 adenylate kinase family protein contains
Pfam profile: PF00406 adenylate kinase
Length = 249
Score = 114 bits (275), Expect = 3e-26
Identities = 57/139 (41%), Positives = 88/139 (63%), Gaps = 1/139 (0%)
Frame = +2
Query: 101 IVWVLGGPGSGKGTQCDKIVAKYGFTHLSTGDLLXAEVKSGSERAKCLTAIMERGELVPN 280
I +VLGGPGSGKGTQC+KIV +G HLS GDLL E+ +E + +++ G++VP+
Sbjct: 45 ITFVLGGPGSGKGTQCEKIVETFGLQHLSAGDLLRREIAMHTENGAMILNLIKDGKIVPS 104
Query: 281 EIVLDLLKEAILARAEESKGFLIDGYPREKSQGXAFEENI-APVSVIIYFEASSETLTHR 457
E+ + L+++ + + +++ FLIDG+PR + AFE I A V+++F+ E + R
Sbjct: 105 EVTVKLIQKEL--ESSDNRKFLIDGFPRTEENRVAFERIIRADPDVVLFFDCPEEEMVKR 162
Query: 458 LLGRAASSGRADDNEETXK 514
+L R + GR DDN T K
Sbjct: 163 VLNR--NQGRIDDNITTMK 179
>At5g47840.1 68418.m05911 adenylate kinase, chloroplast, putative /
ATP-AMP transphosphorylase, putative similar to
SP|P43188 Adenylate kinase, chloroplast (EC 2.7.4.3)
(ATP-AMP transphosphorylase) {Zea mays}; contains Pfam
profile PF00406: Adenylate kinase
Length = 283
Score = 112 bits (270), Expect = 1e-25
Identities = 58/147 (39%), Positives = 84/147 (57%), Gaps = 1/147 (0%)
Frame = +2
Query: 32 KLSHTTSILIL*TMAPIGTSKKPI-VWVLGGPGSGKGTQCDKIVAKYGFTHLSTGDLLXA 208
++S + SI+ +P+ + + G P SGKGTQC+ I KYG H+S GDLL A
Sbjct: 42 RVSRSPSIIAPKFQIVAAEKSEPLKIMISGAPASGKGTQCELITHKYGLVHISAGDLLRA 101
Query: 209 EVKSGSERAKCLTAIMERGELVPNEIVLDLLKEAILARAEESKGFLIDGYPREKSQGXAF 388
E+ SGSE + ME+G+LVP+EIV+ ++K+ + E KG+L+DGYPR SQ A
Sbjct: 102 EIASGSENGRRAKEHMEKGQLVPDEIVVMMVKDRLSQTDSEQKGWLLDGYPRSASQATAL 161
Query: 389 EENIAPVSVIIYFEASSETLTHRLLGR 469
+ + I E E L R++GR
Sbjct: 162 KGFGFQPDLFIVLEVPEEILIERVVGR 188
>At5g35170.1 68418.m04168 adenylate kinase family protein contains
Pfam profile: PF00406 adenylate kinase
Length = 588
Score = 100 bits (239), Expect = 7e-22
Identities = 50/123 (40%), Positives = 73/123 (59%), Gaps = 1/123 (0%)
Frame = +2
Query: 104 VWVLGGPGSGKGTQCDKIVAKYGFTHLSTGDLLXAEVKSGSERAKCLTAIMERGELVPNE 283
V + G P SGKGTQC+ IV K+G H+STGDLL AEV SG++ K M G LVP+E
Sbjct: 82 VMISGAPASGKGTQCELIVHKFGLVHISTGDLLRAEVSSGTDIGKRAKEFMNSGSLVPDE 141
Query: 284 IVLDLLKEAILARAEESKGFLIDGYPREKSQGXAFEE-NIAPVSVIIYFEASSETLTHRL 460
IV+ ++ + + G+L+DG+PR +Q + ++ N+ P + I + E L R
Sbjct: 142 IVIAMVAGRLSREDAKEHGWLLDGFPRSFAQAQSLDKLNVKP-DIFILLDVPDEILIDRC 200
Query: 461 LGR 469
+GR
Sbjct: 201 VGR 203
>At2g37250.1 68415.m04570 adenylate kinase family protein contains
Pfam profile: PF00406 adenylate kinase
Length = 284
Score = 83.4 bits (197), Expect = 8e-17
Identities = 43/136 (31%), Positives = 74/136 (54%), Gaps = 2/136 (1%)
Frame = +2
Query: 80 IGTSKKPIVWV-LGGPGSGKGTQCDKIVAKYGFTHLSTGDLLXAEVKSGSERAKCLTAIM 256
+ + + WV LG PG GKGT ++ G H++TGDL+ E+ S ++ L+ I+
Sbjct: 45 VAPKDRNVQWVFLGCPGVGKGTYASRLSTLLGVPHIATGDLVREELASSGPLSQKLSEIV 104
Query: 257 ERGELVPNEIVLDLLKEAILA-RAEESKGFLIDGYPREKSQGXAFEENIAPVSVIIYFEA 433
+G+LV +EI++DLL + + A A GF++DG+PR Q + + + +++ +
Sbjct: 105 NQGKLVSDEIIVDLLSKRLEAGEARGESGFILDGFPRTMRQAEILGD-VTDIDLVVNLKL 163
Query: 434 SSETLTHRLLGRAASS 481
E L + LGR S
Sbjct: 164 PEEVLVDKCLGRRTCS 179
>At5g63400.1 68418.m07958 adenylate kinase identical to adenylate
kinase (ATP-AMP transphosphorylase) [Arabidopsis
thaliana] SWISS-PROT:O82514
Length = 246
Score = 80.6 bits (190), Expect = 6e-16
Identities = 47/132 (35%), Positives = 73/132 (55%), Gaps = 6/132 (4%)
Frame = +2
Query: 113 LGGPGSGKGTQCDKIVAKYGFTHLSTGDLLXAEVKSGSERAKCLTAIMERGELVPNEIVL 292
+G PGSGKGTQ + +Y HLSTGD+L A V S + ME+GELV +++V+
Sbjct: 39 IGPPGSGKGTQSPVVKDEYCLCHLSTGDMLRAAVASKTPLGVKAKEAMEKGELVSDDLVV 98
Query: 293 DLLKEAILARAEESKGFLIDGYPREKSQGXAFEENI----APVSVIIYFEASSETLTHRL 460
++ EA + + + KGF++DG+PR +Q +E + + ++ F L R+
Sbjct: 99 GIIDEA-MNKPKCQKGFILDGFPRTVTQAEKLDEMLKRRGTEIDKVLNFAIDDAILEERI 157
Query: 461 LGR--AASSGRA 490
GR SSGR+
Sbjct: 158 TGRWIHPSSGRS 169
>At5g50370.1 68418.m06238 adenylate kinase, putative similar to
adenylate kinase (ATP-AMP transphosphorylase)
[Arabidopsis thaliana] SWISS-PROT:O82514
Length = 248
Score = 80.6 bits (190), Expect = 6e-16
Identities = 47/132 (35%), Positives = 74/132 (56%), Gaps = 6/132 (4%)
Frame = +2
Query: 113 LGGPGSGKGTQCDKIVAKYGFTHLSTGDLLXAEVKSGSERAKCLTAIMERGELVPNEIVL 292
+G PGSGKGTQ I ++ HLSTGD+L A V + + M++GELV +++V+
Sbjct: 40 IGPPGSGKGTQSPVIKDEFCLCHLSTGDMLRAAVAAKTPLGVKAKEAMDKGELVSDDLVV 99
Query: 293 DLLKEAILARAEESKGFLIDGYPREKSQGXAFEENI----APVSVIIYFEASSETLTHRL 460
++ EA + R + KGF++DG+PR +Q +E + A + ++ F L R+
Sbjct: 100 GIMDEA-MNRPKCQKGFILDGFPRTVTQAEKLDEMLNRRGAQIDKVLNFAIDDSVLEERI 158
Query: 461 LGR--AASSGRA 490
GR SSGR+
Sbjct: 159 TGRWIHPSSGRS 170
>At2g39270.1 68415.m04822 adenylate kinase family protein contains
Pfam profile: PF00406: adenylate kinase
Length = 295
Score = 79.8 bits (188), Expect = 1e-15
Identities = 41/127 (32%), Positives = 71/127 (55%), Gaps = 2/127 (1%)
Frame = +2
Query: 107 WV-LGGPGSGKGTQCDKIVAKYGFTHLSTGDLLXAEVKSGSERAKCLTAIMERGELVPNE 283
WV LG PG GKGT ++ + G H++TGDL+ E+ S + L ++ G+LVP+E
Sbjct: 67 WVFLGCPGVGKGTYASRLSSLLGVPHIATGDLVREELSSSGLLSSQLKELVNHGKLVPDE 126
Query: 284 IVLDLLKEAILARAEESK-GFLIDGYPREKSQGXAFEENIAPVSVIIYFEASSETLTHRL 460
++ LL + + A ++ + G+++DG+PR +Q E + + ++I + E L +
Sbjct: 127 FIISLLSKRLQAGKDKGESGYILDGFPRTVTQAEIL-EGVTNIDLVINLKLREEALLAKC 185
Query: 461 LGRAASS 481
LGR S
Sbjct: 186 LGRRICS 192
>At3g01820.1 68416.m00124 adenylate kinase family protein contains
Pfam profile: PF00406 adenylate kinase
Length = 263
Score = 52.8 bits (121), Expect = 1e-07
Identities = 31/121 (25%), Positives = 59/121 (48%), Gaps = 2/121 (1%)
Frame = +2
Query: 101 IVWVL-GGPGSGKGTQCDKIVAKYGFTHLSTGDLLXAEVKSGSERAKCLTAIMERGELVP 277
+ WVL G PG+ + +++ H+S G L+ E+ S K + + + +LVP
Sbjct: 63 VQWVLMGAPGAWRHVFAERLSKLLEVPHISMGSLVRQELNPRSSLYKEIASAVNERKLVP 122
Query: 278 NEIVLDLLKEAI-LARAEESKGFLIDGYPREKSQGXAFEENIAPVSVIIYFEASSETLTH 454
+V LL + + A GF++ G PR + Q ++ IA + +++ + S + L +
Sbjct: 123 KSVVFALLSKRLEEGYARGETGFILHGIPRTRFQAETLDQ-IAQIDLVVNLKCSEDHLVN 181
Query: 455 R 457
R
Sbjct: 182 R 182
>At1g27900.1 68414.m03419 RNA helicase, putative similar to
SP|Q14562 ATP-dependent helicase DDX8 (RNA helicase
HRH1) (DEAH-box protein 8) {Homo sapiens}; contains Pfam
profiles PF04408: Helicase associated domain (HA2),
PF00271: Helicase conserved C-terminal domain
Length = 700
Score = 31.5 bits (68), Expect = 0.35
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = +2
Query: 92 KKPIVWVLGGPGSGKGTQCDKIVAKYGFT 178
K +V ++G GSGK TQ +I+ ++G+T
Sbjct: 19 KNSVVVIIGETGSGKSTQLSQILHRHGYT 47
>At2g39730.3 68415.m04879 ribulose bisphosphate
carboxylase/oxygenase activase / RuBisCO activase
identical to SWISS-PROT:P10896 ribulose bisphosphate
carboxylase/oxygenase activase, chloroplast precursor
(RuBisCO activase, RA)[Arabidopsis thaliana]
Length = 441
Score = 30.3 bits (65), Expect = 0.80
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Frame = +2
Query: 101 IVWVLGGPGSGKGTQCDKIVAKYGFT--HLSTGDL 199
I+ + GG G GK QC+ ++AK G +S G+L
Sbjct: 160 ILGIWGGKGQGKSFQCELVMAKMGINPIMMSAGEL 194
>At2g39730.2 68415.m04878 ribulose bisphosphate
carboxylase/oxygenase activase / RuBisCO activase
identical to SWISS-PROT:P10896 ribulose bisphosphate
carboxylase/oxygenase activase, chloroplast precursor
(RuBisCO activase, RA)[Arabidopsis thaliana]
Length = 446
Score = 30.3 bits (65), Expect = 0.80
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Frame = +2
Query: 101 IVWVLGGPGSGKGTQCDKIVAKYGFT--HLSTGDL 199
I+ + GG G GK QC+ ++AK G +S G+L
Sbjct: 160 ILGIWGGKGQGKSFQCELVMAKMGINPIMMSAGEL 194
>At2g39730.1 68415.m04877 ribulose bisphosphate
carboxylase/oxygenase activase / RuBisCO activase
identical to SWISS-PROT:P10896 ribulose bisphosphate
carboxylase/oxygenase activase, chloroplast precursor
(RuBisCO activase, RA)[Arabidopsis thaliana]
Length = 474
Score = 30.3 bits (65), Expect = 0.80
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Frame = +2
Query: 101 IVWVLGGPGSGKGTQCDKIVAKYGFT--HLSTGDL 199
I+ + GG G GK QC+ ++AK G +S G+L
Sbjct: 160 ILGIWGGKGQGKSFQCELVMAKMGINPIMMSAGEL 194
>At2g35340.1 68415.m04333 RNA helicase, putative similar to
ATP-dependent RNA helicase #3 [Homo sapiens] GI:3107913;
contains Pfam profiles PF04408: Helicase associated
domain (HA2), PF00271: Helicase conserved C-terminal
domain
Length = 1110
Score = 29.5 bits (63), Expect = 1.4
Identities = 33/131 (25%), Positives = 56/131 (42%), Gaps = 1/131 (0%)
Frame = +2
Query: 101 IVWVLGGPGSGKGTQCDKIVAKYGFTHLSTGDLLXAEVKSGSERAKCLTAIMERGELVPN 280
++ ++G GSGK TQ + + + G+T L G + + + + + E G + +
Sbjct: 488 VLIIVGETGSGKTTQIPQYLHEAGYTKL--GKVGCTQPRRVAAMSVAARVAQEMGGKLGH 545
Query: 281 EIVLDLLKEAILARAEESKGFLIDGYPREKSQGXAFEENIAPVSVIIYFEASSETL-THR 457
E+ + E + K ++ DG + G E ++ SVII EA TL T
Sbjct: 546 EVGYSIRFEDCTSEKTILK-YMTDGMLLRELLG---EPDLGSYSVIIVDEAHERTLRTDI 601
Query: 458 LLGRAASSGRA 490
L G RA
Sbjct: 602 LFGLVKDIARA 612
>At5g01310.1 68418.m00043 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain, weak hit to PF01661: Appr-1-p
processing enzyme family
Length = 912
Score = 28.7 bits (61), Expect = 2.5
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = +2
Query: 89 SKKPIVWVLGGPGSGKGTQCD 151
+K+ +V ++G PGSGK T CD
Sbjct: 225 AKQIVVLLIGPPGSGKSTFCD 245
>At4g25120.1 68417.m03614 UvrD/REP helicase family protein contains
Pfam PF00580: UvrD/REP helicase
Length = 1122
Score = 28.7 bits (61), Expect = 2.5
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +2
Query: 110 VLGGPGSGKGTQCDKIVAKYGFTHLSTGDLLXAEVKS-GSERAKCLT 247
V+ GPGSGKG I+A FT +T ++ KS G + AK +T
Sbjct: 265 VIAGPGSGKGLLPSNILA-MTFTKAATSEMRERIGKSAGKKAAKDIT 310
>At1g32490.1 68414.m04009 RNA helicase, putative similar to
ATP-dependent RNA helicase #3 [Homo sapiens] GI:3107913;
contains Pfam profiles PF04408: Helicase associated
domain (HA2), PF00271: Helicase conserved C-terminal
domain
Length = 1044
Score = 28.7 bits (61), Expect = 2.5
Identities = 28/121 (23%), Positives = 54/121 (44%)
Frame = +2
Query: 101 IVWVLGGPGSGKGTQCDKIVAKYGFTHLSTGDLLXAEVKSGSERAKCLTAIMERGELVPN 280
++ ++G GSGK TQ + + + G+T G + + + + + E G + +
Sbjct: 422 VLVIVGDTGSGKTTQIPQYLHEAGYT--KRGKVGCTQPRRVAAMSVAARVAQEMGVKLGH 479
Query: 281 EIVLDLLKEAILARAEESKGFLIDGYPREKSQGXAFEENIAPVSVIIYFEASSETLTHRL 460
E+ + E + K ++ DG + G E ++A SV+I EA TL+ +
Sbjct: 480 EVGYSIRFEDCTSDKTVLK-YMTDGMLLRELLG---EPDLASYSVVIVDEAHERTLSTDI 535
Query: 461 L 463
L
Sbjct: 536 L 536
>At1g33240.1 68414.m04108 trihelix DNA-binding protein, putative
similar to GTL1 [Arabidopsis thaliana] GI:2664198
Length = 669
Score = 27.5 bits (58), Expect = 5.7
Identities = 18/66 (27%), Positives = 28/66 (42%)
Frame = -1
Query: 279 LGTSSPLSIIAVRHFALSEPLLTSAXSRSPVER*VNPYLATILSHCVPFPXPGPPRTHTI 100
L T+ P S + V +++ P+L + S SP + S P PP+TH +
Sbjct: 147 LNTTPPSSSLDVTPLSVANPILMPSSSSSPFP---------VFSQPQPQTQTQPPQTHNV 197
Query: 99 GFFDVP 82
F P
Sbjct: 198 SFTPTP 203
>At5g42970.1 68418.m05241 COP9 signalosome complex subunit 4 / CSN
complex subunit 4 (CSN4) (COP8) (FUS4) FUSCA4, COP8,
CSN4; identical to CSN complex subunit 4 [Arabidopsis
thaliana] GI:18056659, COP8 [Arabidopsis thaliana]
GI:5802627; contains Pfam profile PF01399: PCI domain;
identical to cDNA CSN complex subunit 4 (CSN4)
GI:18056658
Length = 397
Score = 27.1 bits (57), Expect = 7.5
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = -2
Query: 452 ASASPRRPRSILSP-KQERCSLQKXYPVTSR 363
A A P+R R + + K ERCS K YP+ +
Sbjct: 235 AGAGPQRSRVLATLYKDERCSKLKIYPILQK 265
>At5g40870.1 68418.m04963 uracil phosphoribosyltransferase, putative
/ UMP pyrophosphorylase, putative / UPRTase, putative
similar to SP|O65583 Uracil phosphoribosyltransferase
(EC 2.4.2.9) (UMP pyrophosphorylase) (UPRTase)
{Arabidopsis thaliana}; contains Pfam profile PF00485:
Phosphoribulokinase / Uridine kinase family
Length = 486
Score = 27.1 bits (57), Expect = 7.5
Identities = 13/24 (54%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Frame = +2
Query: 92 KKP-IVWVLGGPGSGKGTQCDKIV 160
K+P I+ V GG SGK T CD I+
Sbjct: 60 KQPFIIGVSGGTASGKTTVCDMII 83
>At3g55110.1 68416.m06120 ABC transporter family protein ATP-binding
cassette-sub-family G-member 2, Mus musculus,
EMBL:AF140218
Length = 708
Score = 27.1 bits (57), Expect = 7.5
Identities = 17/58 (29%), Positives = 27/58 (46%)
Frame = +2
Query: 101 IVWVLGGPGSGKGTQCDKIVAKYGFTHLSTGDLLXAEVKSGSERAKCLTAIMERGELV 274
I+ VLGG G+GK T D + + L L E S K ++A + + +L+
Sbjct: 104 ILAVLGGSGAGKSTLIDALAGRVAEDSLKGTVTLNGEKVLQSRLLKVISAYVMQDDLL 161
>At2g17110.1 68415.m01974 expressed protein
Length = 733
Score = 27.1 bits (57), Expect = 7.5
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = -1
Query: 174 NPYLATILSHCVPFPXPGPPRTHTIGFFD 88
NPYL + +P P P PPR F D
Sbjct: 159 NPYLNSNYGSKLPPPPPSPPREKVWDFLD 187
>At1g51500.1 68414.m05796 ABC transporter family protein similar to
GB:AAF61569 from [Bombyx mori]
Length = 687
Score = 27.1 bits (57), Expect = 7.5
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +2
Query: 101 IVWVLGGPGSGKGTQCDKIVAKYGFTHLSTGDLL 202
I+ ++G GSGK T D + + + TG+LL
Sbjct: 57 IMAIMGPSGSGKSTLLDSLAGRLARNVIMTGNLL 90
>At5g60340.1 68418.m07564 maoC-like dehydratase domain-containing
protein contains similarity to (R)-specific enoyl-CoA
hydratase PhaJ1 [Pseudomonas oleovorans]
gi|22506675|gb|AAM97601; contains Pfam domain PF01575:
MaoC like domain
Length = 337
Score = 26.6 bits (56), Expect = 9.9
Identities = 10/37 (27%), Positives = 19/37 (51%)
Frame = +2
Query: 92 KKPIVWVLGGPGSGKGTQCDKIVAKYGFTHLSTGDLL 202
++P + + G PG+GK T + ++ GDL+
Sbjct: 12 ERPNLLITGTPGTGKSTTASALAEATNLRYICIGDLV 48
>At5g14400.1 68418.m01682 cytochrome P450 family protein similar to
steroid 22-alpha-hydroxylase; DWF4; CYP90B1 (GI:2935342)
[Arabidopsis thaliana]
Length = 439
Score = 26.6 bits (56), Expect = 9.9
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = +2
Query: 386 FEENIAPVSVIIYFEASSETLTHRLL-GRAASSGRADDNE 502
FE + +S+++YF A S L H+L AA + D E
Sbjct: 249 FETSATTLSLVVYFLAKSPNLLHKLKEEHAAIRAKKGDGE 288
>At5g13580.1 68418.m01570 ABC transporter family protein
Length = 727
Score = 26.6 bits (56), Expect = 9.9
Identities = 18/58 (31%), Positives = 29/58 (50%)
Frame = +2
Query: 101 IVWVLGGPGSGKGTQCDKIVAKYGFTHLSTGDLLXAEVKSGSERAKCLTAIMERGELV 274
I+ VLG GSGK T D + + L L EV + S+ K ++A + + +L+
Sbjct: 121 ILAVLGASGSGKSTLIDALANRIAKGSLKGNVTLNGEVLN-SKMQKAISAYVMQDDLL 177
>At3g21090.1 68416.m02666 ABC transporter family protein similar to
ATP-binding cassette, sub-family G (WHITE), member 2
GB:NP_036050 from [Mus musculus]
Length = 691
Score = 26.6 bits (56), Expect = 9.9
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +2
Query: 101 IVWVLGGPGSGKGTQCDKIVAKYGFTHLSTGDLL 202
I+ ++G GSGK T D + + + TG+LL
Sbjct: 58 IMAIMGPSGSGKSTLLDSLAGRLARNVVMTGNLL 91
>At1g19290.1 68414.m02398 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 745
Score = 26.6 bits (56), Expect = 9.9
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +2
Query: 257 ERGELVPNEIVLDLLKEAILARAEESKGFLIDGYPR 364
++G + E V +LLKE L + G L+DGY R
Sbjct: 149 KKGLMEEAEHVFELLKEKKLVADQHMYGVLMDGYCR 184
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,439,535
Number of Sequences: 28952
Number of extensions: 214728
Number of successful extensions: 652
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 625
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 642
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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