Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31714
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1786.03 |cut11|SPAC24C9.01|integral membrane nucleoporin|Sch...    27   1.7  
SPCC1183.04c |pet127||mitochondrial membrane protein Pet127|Schi...    27   2.2  
SPCC1739.06c |||uroporphyrin methyltransferase |Schizosaccharomy...    26   2.9  
SPCC63.08c |ppk36|atg1|serine/threonine protein kinase Ppk36|Sch...    26   2.9  
SPAC1002.10c |sgt1||SGT1 family transcriptional regulator Sgt1|S...    25   6.7  
SPBC28E12.05 |esf2|SPBC3H7.17c|U3 snoRNP-associated protein Esf2...    25   6.7  
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc...    25   8.9  

>SPAC1786.03 |cut11|SPAC24C9.01|integral membrane
           nucleoporin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -2

Query: 350 SFFVMPYIFCSLSSCVCLFPNDSHSNSAR 264
           SFF++   F    SC+CLF    H++S R
Sbjct: 107 SFFLVYLTFAVSVSCLCLFYIKGHASSIR 135


>SPCC1183.04c |pet127||mitochondrial membrane protein
           Pet127|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 524

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = -2

Query: 341 VMPYIFCSLSSCVCLFPNDSHSNSARNS*MFDLWS*RY 228
           V P  FC+L  C   F N  H +  ++    + WS +Y
Sbjct: 436 VSPSNFCALEVCALQFVNGVHKSVVKHLDEKETWSIKY 473


>SPCC1739.06c |||uroporphyrin methyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 496

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +2

Query: 53  DYLVRSANISFKNSHANEQPVRTCEKLQMALEI 151
           D+LV +  +S  N H  E   RTC++ ++ L I
Sbjct: 86  DFLVDAVFVSESNHHEKEILHRTCKRYRIPLNI 118


>SPCC63.08c |ppk36|atg1|serine/threonine protein kinase
           Ppk36|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 830

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
 Frame = +2

Query: 125 EKLQMALEIYKRSPVEFLMQFGK--YLAPNHIKYFENISSSKD 247
           EK     +++    V + M  GK  + APNH++    I  +KD
Sbjct: 224 EKYDAKADLWSVGAVLYEMAVGKPPFKAPNHVELLRRIQKAKD 266


>SPAC1002.10c |sgt1||SGT1 family transcriptional regulator
           Sgt1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 590

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 4/95 (4%)
 Frame = +2

Query: 221 FENISSSKDQTFRNYVHYLSDYHSETSXXXXXXXXXYKALQKMKIKTDY---FSEKQMMY 391
           +  +   + +TFR + H  SD HS             +A+  MK+   +   ++ K+ + 
Sbjct: 269 YAQLYQQRCKTFRPF-HLPSDVHS---------LDYERAILGMKLSCGFEILYNSKENVE 318

Query: 392 RNPLLYEQLVGQYL-TDEEIKERDRITENVSFLNL 493
           +   + E L  Q L TDE+IK+   I ++ SF+N+
Sbjct: 319 KRTEIDEYLQIQPLPTDEDIKKIPLIEDDTSFMNV 353


>SPBC28E12.05 |esf2|SPBC3H7.17c|U3 snoRNP-associated protein Esf2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 334

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = +2

Query: 95  HANEQPVRTCEKLQMALEIYKRSPVEFLMQFGKYLAPNHIK 217
           +AN     + E+++   +  KRS V +L +   Y+APN ++
Sbjct: 99  NANSIKKISLEEVEKQRKAIKRSGVIYLSRIPPYMAPNKLR 139


>SPAC328.05 |||RNA-binding protein involved in export of
           mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 434

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -1

Query: 165 GDLL*ISRAICSFSHVLTGCSLAWEFLKDIF 73
           G++  IS  + SF   L   ++ W+ LKD+F
Sbjct: 173 GNVSSISNPLYSFPRTLLPYNVRWQDLKDLF 203


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,905,704
Number of Sequences: 5004
Number of extensions: 37206
Number of successful extensions: 111
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)