Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31714
         (516 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37070| Best HMM Match : Vicilin_N (HMM E-Value=4.8)                 86   2e-17
SB_41262| Best HMM Match : DUF1581 (HMM E-Value=5)                     27   6.9  
SB_30116| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.9  
SB_24841| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.9  
SB_9926| Best HMM Match : DPPIV_N (HMM E-Value=0)                      27   6.9  
SB_37888| Best HMM Match : Glycos_transf_4 (HMM E-Value=4.1)           27   9.2  
SB_3226| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=0.021)           27   9.2  

>SB_37070| Best HMM Match : Vicilin_N (HMM E-Value=4.8)
          Length = 319

 Score = 85.8 bits (203), Expect = 2e-17
 Identities = 45/136 (33%), Positives = 78/136 (57%), Gaps = 5/136 (3%)
 Frame = +2

Query: 68  SANISFKNSHANEQPVRTCEKLQMALEIYKRSPVEFLMQFGKYLAPNHIKYFENISSSKD 247
           ++ ++ K+   +E  + + +K+++  EI K +P  FLM+FG+ L    ++YFE++   K 
Sbjct: 24  NSGVTIKSQQRDEPDLSSEQKIKILEEIKKTNPASFLMRFGQSLVTKDLEYFESLY--KQ 81

Query: 248 QTFRNY-----VHYLSDYHSETSXXXXXXXXXYKALQKMKIKTDYFSEKQMMYRNPLLYE 412
            T  NY     +  +  +  +           Y+A+Q++   + +FSE++M  RNPLLYE
Sbjct: 82  NTLTNYEIGFRLKEIKKHLDQQKHHVEVQNRRYEAMQRLINDSTFFSEEEMRKRNPLLYE 141

Query: 413 QLVGQYLTDEEIKERD 460
           Q +GQYLT+EE  ERD
Sbjct: 142 QYIGQYLTEEEKLERD 157


>SB_41262| Best HMM Match : DUF1581 (HMM E-Value=5)
          Length = 521

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +2

Query: 149 IYKRSPVEFLMQFGKYLAPNHIKYFENISSSKDQTFRNYVHY 274
           I K SPV  + Q  +Y +PN   + EN     D   + Y +Y
Sbjct: 401 IEKHSPVTSVDQVREYASPNEPDFLENSLQDIDVDSKKYRNY 442


>SB_30116| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 266

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 5/55 (9%)
 Frame = -3

Query: 265 VIPKCLIFGARDIFKVFYVIRS*IFSELHEK-----FYR*SFINFKGHLQFLTCP 116
           VIPKC++  AR + KV       +F+EL+       F   S++N K  L  +TCP
Sbjct: 1   VIPKCMVLNARSLAKVDAAPA--LFAELNSNNIDICFVSESWLN-KKILSHMTCP 52


>SB_24841| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 579

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +2

Query: 149 IYKRSPVEFLMQFGKYLAPNHIKYFENISSSKDQTFRNYVHY 274
           I K SPV  + Q  +Y +PN   + EN     D   + Y +Y
Sbjct: 459 IEKHSPVTSVDQVREYASPNEPDFLENSLQDIDVDSKKYRNY 500


>SB_9926| Best HMM Match : DPPIV_N (HMM E-Value=0)
          Length = 1066

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +2

Query: 56  YLVRSANISFKNSHANEQPVRTCEKLQMALEIYKRS 163
           +LV S   SF  ++ N  PV+TC KL    ++  R+
Sbjct: 678 FLVTSKGNSFIKANKNVHPVQTCTKLTYIQQVRLRA 713


>SB_37888| Best HMM Match : Glycos_transf_4 (HMM E-Value=4.1)
          Length = 355

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -1

Query: 135 CSFSHVLTGCSLAWEFLKDIFALLTR 58
           CS  H  T C+  W +    FA++T+
Sbjct: 215 CSLCHYYTSCATVWHYNIAAFAIITQ 240


>SB_3226| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=0.021)
          Length = 1217

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
 Frame = +2

Query: 338 LQKMKIKTDYFSEKQMMYRNPLLYEQLVGQYLTDEEI---KERDRITENVSFLNLILET 505
           L+  + K DYF+    M   PLL +Q     + D E    +E +R+ + +     ++ET
Sbjct: 635 LKTQEKKVDYFARAMRMEEIPLLNKQYEEHLVADREFWENQEEERVRKAIEEHEKLVET 693


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,192,974
Number of Sequences: 59808
Number of extensions: 240981
Number of successful extensions: 463
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 435
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 461
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)