Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31714
         (516 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g47090.1 68418.m05806 expressed protein                             35   0.037
At4g16155.1 68417.m02451 dihydrolipoamide dehydrogenase 2, plast...    29   2.5  
At5g52030.2 68418.m06456 TraB protein-related                          27   5.7  
At1g62530.1 68414.m07055 hypothetical protein                          27   7.5  
At2g19660.1 68415.m02297 DC1 domain-containing protein contains ...    27   9.9  
At1g10540.1 68414.m01187 xanthine/uracil permease family protein...    27   9.9  

>At5g47090.1 68418.m05806 expressed protein
          Length = 310

 Score = 34.7 bits (76), Expect = 0.037
 Identities = 25/105 (23%), Positives = 45/105 (42%), Gaps = 3/105 (2%)
 Frame = +2

Query: 125 EKLQMALEIYKRSPVEFLMQFGKYLAPNHIKYFENISSSK--DQTFRNYVHYLSDYHSET 298
           ++  + L++ +R P  FL ++G  L  + +  F+ +      D   +N    +S    E 
Sbjct: 48  QRKSILLDLLRRDPAVFLERYGSELLVDELLEFDAMKHDYEVDWHLKNLRKKISPTSEEI 107

Query: 299 SXXXXXXXXXYKA-LQKMKIKTDYFSEKQMMYRNPLLYEQLVGQY 430
                       A L K+  +  YFSE  M  R P L+ + VG++
Sbjct: 108 KSRSVAVRNRRLAYLNKLVSEGQYFSEDAMRDREPYLHHEYVGKF 152


>At4g16155.1 68417.m02451 dihydrolipoamide dehydrogenase 2,
           plastidic / lipoamide dehydrogenase 2 (PTLPD2) identical
           to plastidic lipoamide dehydrogenase from Arabidopsis
           thaliana [gi:7159284]
          Length = 567

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +2

Query: 167 VEFLMQFGKYLAPNHIKYFENISSSKD 247
           V+ L  FG  L P  +KY +NI + KD
Sbjct: 190 VDILTGFGAVLGPQKVKYGDNIITGKD 216


>At5g52030.2 68418.m06456 TraB protein-related
          Length = 402

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 19/69 (27%), Positives = 39/69 (56%)
 Frame = +2

Query: 56  YLVRSANISFKNSHANEQPVRTCEKLQMALEIYKRSPVEFLMQFGKYLAPNHIKYFENIS 235
           +LV +++IS +++   E+ VRT +   +A+E+ +   V+F +Q  K+ A   I Y  ++ 
Sbjct: 95  WLVGTSHISPESASIVERVVRTVKPDNVAVELCRSRKVQFFIQ-TKFGA--GIMYTSSVG 151

Query: 236 SSKDQTFRN 262
              DQ  ++
Sbjct: 152 GEVDQNLKS 160


>At1g62530.1 68414.m07055 hypothetical protein
          Length = 282

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +2

Query: 59  LVRSANISFKNSHANEQPVRTCEKLQM-ALEIYKRSPVE 172
           LV  + +S   SH  ++P R+C+  ++  LEI +  P E
Sbjct: 149 LVHISAVSHNQSHGVQEPGRSCDSFELHTLEIRETVPEE 187


>At2g19660.1 68415.m02297 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 662

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -1

Query: 198 KYFPNCMRNSTGDLL*ISRAICSFSHVLTGCSLAWE 91
           K+F  C  N  G +L IS  +  FS+ + G  + WE
Sbjct: 569 KWFYTC--NDCGVILHISCVVGDFSYYMPGSKIGWE 602


>At1g10540.1 68414.m01187 xanthine/uracil permease family protein
           contains Pfam profile: PF00860 permease family
          Length = 539

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 17/56 (30%), Positives = 26/56 (46%)
 Frame = -1

Query: 198 KYFPNCMRNSTGDLL*ISRAICSFSHVLTGCSLAWEFLKDIFALLTR*SMISVTGF 31
           K F   MR   G L+     I SF H+L G S  W  +    + L+   +++ +GF
Sbjct: 132 KRFEQIMRGIQGALI-----IASFLHILVGFSGLWRNVTRFLSPLSAVPLVAFSGF 182


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,405,492
Number of Sequences: 28952
Number of extensions: 174491
Number of successful extensions: 389
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 384
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 389
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)