Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31713
         (312 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0703 + 26444128-26446215,26446525-26447226                       28   1.8  
07_03_1554 + 27659995-27660093,27661084-27661120,27661204-276612...    27   3.1  
07_01_0523 - 3879550-3880134,3880313-3880491,3881519-3882383           26   5.4  
04_04_1263 - 32207636-32207938,32208020-32208170,32208263-322085...    26   7.2  
08_02_1564 + 27892707-27892760,27892875-27892946,27893049-278931...    25   9.5  

>11_06_0703 + 26444128-26446215,26446525-26447226
          Length = 929

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +3

Query: 48  HWNLLRRDISXV*VGFCQALLLLRASVSKL 137
           HWNLL+ D+S   +G C+   LLR  V  L
Sbjct: 468 HWNLLQLDLSYFDLGGCKMHGLLRQLVCYL 497


>07_03_1554 +
           27659995-27660093,27661084-27661120,27661204-27661280,
           27662272-27662342,27662512-27662590,27662726-27662828,
           27662963-27663082,27663180-27663257,27663416-27663471,
           27663588-27663657,27664179-27664266,27664503-27664800,
           27664943-27665158,27665521-27665841,27666054-27666103,
           27666493-27666553,27666633-27666716,27666926-27667039,
           27667134-27667300,27667559-27667628,27668328-27668507,
           27668619-27668807
          Length = 875

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 17/49 (34%), Positives = 24/49 (48%)
 Frame = +2

Query: 155 VQLGIGPDAYQRNRTQ*TTQHVLXEXGNIXGSCRQGGKYKQASPGXTPR 301
           V+L    D ++  R+Q   Q    + GN  GS   G  YK +SP  +PR
Sbjct: 829 VELTTRLDFFKERRSQLMEQLHSLDLGN--GSANHGFPYKSSSPWNSPR 875


>07_01_0523 - 3879550-3880134,3880313-3880491,3881519-3882383
          Length = 542

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -1

Query: 300 RGVLPGLACLYLPPCLQEPXIFPXSXXT 217
           R V  GL C   PP ++EP ++P    T
Sbjct: 472 RPVGHGLYCNQSPPAIREPYVYPAKEVT 499


>04_04_1263 -
           32207636-32207938,32208020-32208170,32208263-32208500,
           32208604-32208814,32208927-32209108,32209196-32209297,
           32210002-32211187,32212103-32212499,32212551-32212582,
           32212885-32213157,32213307-32213394,32213486-32213723,
           32213824-32214034,32214119-32214300,32214378-32214479,
           32214801-32216224,32216751-32216822,32217688-32217719,
           32218186-32218263,32218425-32218512,32218608-32218845,
           32219060-32219162,32219386-32219558,32219644-32219745,
           32219825-32220606,32220659-32221012,32224055-32224140,
           32224250-32224400,32224534-32224771,32224876-32225119,
           32225190-32225368,32225577-32225675,32225835-32227083
          Length = 3195

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +1

Query: 73  FLQCE*DSAKHCSCLGLVLANYSAG*ARATGNR 171
           F QC  + + +CSC     AN S+G   A  +R
Sbjct: 355 FDQCAAECSSNCSCKAYAYANLSSGGTMADPSR 387


>08_02_1564 +
           27892707-27892760,27892875-27892946,27893049-27893100,
           27893225-27893305,27893768-27893886,27894102-27894321,
           27894475-27894593,27894683-27894808,27894993-27895133,
           27895240-27895563
          Length = 435

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -2

Query: 215 VGLFIESYXAGKRQGLFPVARAQP 144
           VG+F+E   A + Q +  VARAQP
Sbjct: 393 VGVFLEGGSAEENQVIAKVARAQP 416


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,841,036
Number of Sequences: 37544
Number of extensions: 129170
Number of successful extensions: 254
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 245
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 254
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 388087168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)