Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31713
         (312 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43697| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.0  
SB_37745| Best HMM Match : DUF1610 (HMM E-Value=2.7)                   29   1.0  
SB_53124| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   1.3  
SB_41688| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   1.3  
SB_11884| Best HMM Match : RhoGAP (HMM E-Value=7.4)                    28   1.8  
SB_54652| Best HMM Match : Retrotrans_gag (HMM E-Value=0.52)           25   9.5  
SB_33821| Best HMM Match : zf-MIZ (HMM E-Value=1.3e-29)                25   9.5  

>SB_43697| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 227

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -1

Query: 300 RGVLPGLACLYLPPCLQEPXIFP 232
           RG+ PG  C Y  PC ++P + P
Sbjct: 37  RGMCPGEGCTYSYPCRRKPNVCP 59


>SB_37745| Best HMM Match : DUF1610 (HMM E-Value=2.7)
          Length = 111

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -1

Query: 300 RGVLPGLACLYLPPCLQEPXIFP 232
           RG+ PG  C Y  PC ++P + P
Sbjct: 35  RGMCPGEGCTYSYPCRRKPNVCP 57


>SB_53124| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 248

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -2

Query: 311 LFSSGVXYRDLLVCTCLPACRSQXYSLPR 225
           +F SG+ Y D L C CL +  ++ +++ R
Sbjct: 160 IFGSGLSYEDALECACLSSLEARRHNVCR 188


>SB_41688| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 129

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 15/30 (50%), Positives = 16/30 (53%)
 Frame = -3

Query: 310 CLAAGCXTGTCLFVLASLPAGAXNIPXLVQ 221
           C A G   G CLFV   LP G  NI  LV+
Sbjct: 102 CFALGTNKGNCLFV---LPYGKNNIALLVE 128


>SB_11884| Best HMM Match : RhoGAP (HMM E-Value=7.4)
          Length = 248

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -2

Query: 311 LFSSGVXYRDLLVCTCLPACRSQXYSLPR 225
           +F SG+ Y D L C CL    ++ +++ R
Sbjct: 160 IFGSGLSYEDALECACLSTLEARRHNVCR 188


>SB_54652| Best HMM Match : Retrotrans_gag (HMM E-Value=0.52)
          Length = 721

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
 Frame = -2

Query: 296 VXYRDLLVCTCLPACRSQXYSLPRXX-HVGLFIESYXAGKRQG 171
           V  R  L C   P    Q  S  R   H+   +E+Y +G+RQG
Sbjct: 611 VVQRKQLTCVFPPRMNIQAPSRRRSLTHIANDVETYHSGRRQG 653


>SB_33821| Best HMM Match : zf-MIZ (HMM E-Value=1.3e-29)
          Length = 1202

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +3

Query: 201 NKQPNMXXTRXGIXLAPAGREASTNKQVPVXHP 299
           N+ PN    + G  + PAG + S  +Q P   P
Sbjct: 597 NQMPNQGGPQMGYQMQPAGYQQSGYQQQPTPPP 629


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,731,727
Number of Sequences: 59808
Number of extensions: 139727
Number of successful extensions: 228
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 218
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 228
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 387973711
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)