Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31713
         (312 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC084158-16|AAK68571.2|  347|Caenorhabditis elegans Hypothetical...    27   2.1  
L11247-2|AAK84521.1| 1274|Caenorhabditis elegans Npc1 (human nie...    27   3.6  
U97405-11|AAB53004.1|  672|Caenorhabditis elegans Hypothetical p...    25   8.4  

>AC084158-16|AAK68571.2|  347|Caenorhabditis elegans Hypothetical
           protein Y69A2AR.26 protein.
          Length = 347

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = -2

Query: 209 LFIESYXAGKRQGLFPVARAQPAE*FANTSPKQEQCLAESYSHXRNIPAQQ 57
           L ++ Y  G  + L  ++ + P E   N+   + +CL E   H RN P +Q
Sbjct: 232 LELDEYECGLLKSLLLLSSSFPGEVQLNSQQSRAKCLTEMLQH-RNDPERQ 281


>L11247-2|AAK84521.1| 1274|Caenorhabditis elegans Npc1 (human niemann
            pick c disease)related protein 2 protein.
          Length = 1274

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +1

Query: 25   STLKYIRPTGTCCAGIFLQ-CE*DSAKHCS 111
            S L+++ P G+CC     Q C+  +A HCS
Sbjct: 935  SYLQFMHPRGSCCKMDGKQFCDPSNATHCS 964


>U97405-11|AAB53004.1|  672|Caenorhabditis elegans Hypothetical
           protein T09B4.1 protein.
          Length = 672

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 14/40 (35%), Positives = 17/40 (42%)
 Frame = -2

Query: 296 VXYRDLLVCTCLPACRSQXYSLPRXXHVGLFIESYXAGKR 177
           + YRD     CL  C  Q +       +  FI SY AG R
Sbjct: 118 IEYRDSQTQRCLGFCFRQLFFSRMWVFILQFIASYYAGDR 157


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,303,976
Number of Sequences: 27780
Number of extensions: 104632
Number of successful extensions: 170
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 344570176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)