Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31713
         (312 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g13820.2 68415.m01527 protease inhibitor/seed storage/lipid t...    27   2.0  
At2g13820.1 68415.m01526 protease inhibitor/seed storage/lipid t...    27   2.0  
At1g30280.1 68414.m03703 expressed protein contains low similari...    27   2.6  
At1g56350.1 68414.m06479 peptide chain release factor, putative ...    26   6.1  

>At2g13820.2 68415.m01527 protease inhibitor/seed storage/lipid
           transfer protein (LTP) family protein contains Pfam
           protease inhibitor/seed storage/LTP family domain
           PF00234
          Length = 129

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 6/43 (13%)
 Frame = +1

Query: 19  SGSTLKYIRPTGTCCAGIFL------QCE*DSAKHCSCLGLVL 129
           SGST+  ++P GTCC+G+        +C  ++ K+   LGL L
Sbjct: 43  SGSTV--VKPEGTCCSGLKTVVRTGPECLCEAFKNSGSLGLTL 83


>At2g13820.1 68415.m01526 protease inhibitor/seed storage/lipid
           transfer protein (LTP) family protein contains Pfam
           protease inhibitor/seed storage/LTP family domain
           PF00234
          Length = 169

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 6/43 (13%)
 Frame = +1

Query: 19  SGSTLKYIRPTGTCCAGIFL------QCE*DSAKHCSCLGLVL 129
           SGST+  ++P GTCC+G+        +C  ++ K+   LGL L
Sbjct: 43  SGSTV--VKPEGTCCSGLKTVVRTGPECLCEAFKNSGSLGLTL 83


>At1g30280.1 68414.m03703 expressed protein contains low similarity
           to cyclin G-associated kinase GI:1902912 SP|P97874 from
           [Rattus norvegicus]
          Length = 455

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -2

Query: 101 LAESYSHXRNIPAQQVPVG 45
           LA S SH RN+PA ++P G
Sbjct: 76  LASSKSHGRNLPAFRIPSG 94


>At1g56350.1 68414.m06479 peptide chain release factor, putative
           similar to SP|P28353 Peptide chain release factor 2
           (RF-2). {Salmonella typhi}; contains Pfam profiles
           PF00472: Peptidyl-tRNA hydrolase domain, PF03462: PCRF
           domain
          Length = 482

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -3

Query: 115 SKSSAWQNPTHTXEISR 65
           +KS  W +PTH  +ISR
Sbjct: 150 NKSDLWDDPTHAGKISR 166


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,971,655
Number of Sequences: 28952
Number of extensions: 94409
Number of successful extensions: 135
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 12,070,560
effective HSP length: 70
effective length of database: 10,043,920
effective search space used: 331449360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)