Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31710
         (435 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P09491 Cluster: Tropomyosin-2; n=15; Endopterygota|Rep:...    51   9e-06
UniRef50_P49455 Cluster: Tropomyosin-1, isoforms 33/34; n=219; B...    41   0.013
UniRef50_P06754 Cluster: Tropomyosin-1, isoforms 9A/A/B; n=38; B...    41   0.013
UniRef50_Q59GR8 Cluster: TPM1 protein variant; n=78; Euteleostom...    38   0.12 
UniRef50_P09493 Cluster: Tropomyosin alpha-1 chain; n=305; Chord...    38   0.12 
UniRef50_UPI00005A4F4C Cluster: PREDICTED: similar to tropomyosi...    37   0.16 
UniRef50_Q4T5C6 Cluster: Chromosome undetermined SCAF9326, whole...    37   0.21 
UniRef50_Q128G9 Cluster: Transglutaminase-like; n=2; Burkholderi...    33   2.0  
UniRef50_Q5JM77 Cluster: Putative uncharacterized protein OSJNBb...    33   2.6  
UniRef50_Q6C1Q6 Cluster: Similarity; n=1; Yarrowia lipolytica|Re...    32   4.6  

>UniRef50_P09491 Cluster: Tropomyosin-2; n=15; Endopterygota|Rep:
           Tropomyosin-2 - Drosophila melanogaster (Fruit fly)
          Length = 284

 Score = 51.2 bits (117), Expect = 9e-06
 Identities = 27/34 (79%), Positives = 28/34 (82%)
 Frame = +1

Query: 331 AEVXALNRKVQQIEEDL*KSEERSGTAQQKLLVA 432
           +EV   NRKVQQIEEDL KSEERS TAQQKLL A
Sbjct: 83  SEVATQNRKVQQIEEDLEKSEERSTTAQQKLLEA 116



 Score = 31.9 bits (69), Expect = 6.0
 Identities = 15/21 (71%), Positives = 18/21 (85%)
 Frame = +3

Query: 270 KLEQANKDLEEKEKQLTATVS 332
           +LE+AN +LEEKEK LTAT S
Sbjct: 63  QLEKANTELEEKEKLLTATES 83


>UniRef50_P49455 Cluster: Tropomyosin-1, isoforms 33/34; n=219;
           Bilateria|Rep: Tropomyosin-1, isoforms 33/34 -
           Drosophila melanogaster (Fruit fly)
          Length = 518

 Score = 40.7 bits (91), Expect = 0.013
 Identities = 19/31 (61%), Positives = 25/31 (80%)
 Frame = +1

Query: 331 AEVXALNRKVQQIEEDL*KSEERSGTAQQKL 423
           +EV ALNR++Q +EEDL +SEER G+A  KL
Sbjct: 83  SEVAALNRRIQLLEEDLERSEERLGSATAKL 113


>UniRef50_P06754 Cluster: Tropomyosin-1, isoforms 9A/A/B; n=38;
           Bilateria|Rep: Tropomyosin-1, isoforms 9A/A/B -
           Drosophila melanogaster (Fruit fly)
          Length = 339

 Score = 40.7 bits (91), Expect = 0.013
 Identities = 19/31 (61%), Positives = 25/31 (80%)
 Frame = +1

Query: 331 AEVXALNRKVQQIEEDL*KSEERSGTAQQKL 423
           +EV ALNR++Q +EEDL +SEER G+A  KL
Sbjct: 137 SEVAALNRRIQLLEEDLERSEERLGSATAKL 167


>UniRef50_Q59GR8 Cluster: TPM1 protein variant; n=78;
           Euteleostomi|Rep: TPM1 protein variant - Homo sapiens
           (Human)
          Length = 303

 Score = 37.5 bits (83), Expect = 0.12
 Identities = 17/35 (48%), Positives = 27/35 (77%)
 Frame = +1

Query: 331 AEVXALNRKVQQIEEDL*KSEERSGTAQQKLLVAQ 435
           A+V +LNR++Q +EE+L +++ER  TA QKL  A+
Sbjct: 105 ADVASLNRRIQLVEEELDRAQERLATALQKLEEAE 139


>UniRef50_P09493 Cluster: Tropomyosin alpha-1 chain; n=305;
           Chordata|Rep: Tropomyosin alpha-1 chain - Homo sapiens
           (Human)
          Length = 284

 Score = 37.5 bits (83), Expect = 0.12
 Identities = 17/35 (48%), Positives = 27/35 (77%)
 Frame = +1

Query: 331 AEVXALNRKVQQIEEDL*KSEERSGTAQQKLLVAQ 435
           A+V +LNR++Q +EE+L +++ER  TA QKL  A+
Sbjct: 83  ADVASLNRRIQLVEEELDRAQERLATALQKLEEAE 117


>UniRef50_UPI00005A4F4C Cluster: PREDICTED: similar to tropomyosin 3
           isoform 2; n=2; Eutheria|Rep: PREDICTED: similar to
           tropomyosin 3 isoform 2 - Canis familiaris
          Length = 215

 Score = 37.1 bits (82), Expect = 0.16
 Identities = 17/35 (48%), Positives = 26/35 (74%)
 Frame = +1

Query: 331 AEVXALNRKVQQIEEDL*KSEERSGTAQQKLLVAQ 435
           AE  +LNR++Q +EE+L +++ER  TA QKL  A+
Sbjct: 70  AEAASLNRRIQLVEEELDRAQERLATALQKLEEAE 104


>UniRef50_Q4T5C6 Cluster: Chromosome undetermined SCAF9326, whole
           genome shotgun sequence; n=3; Clupeocephala|Rep:
           Chromosome undetermined SCAF9326, whole genome shotgun
           sequence - Tetraodon nigroviridis (Green puffer)
          Length = 46

 Score = 36.7 bits (81), Expect = 0.21
 Identities = 17/35 (48%), Positives = 26/35 (74%)
 Frame = +1

Query: 331 AEVXALNRKVQQIEEDL*KSEERSGTAQQKLLVAQ 435
           AEV +LNR++Q +EE+L +++ER  TA  KL  A+
Sbjct: 4   AEVASLNRRIQLVEEELDRAQERLATALHKLEEAE 38


>UniRef50_Q128G9 Cluster: Transglutaminase-like; n=2;
           Burkholderiales|Rep: Transglutaminase-like - Polaromonas
           sp. (strain JS666 / ATCC BAA-500)
          Length = 1217

 Score = 33.5 bits (73), Expect = 2.0
 Identities = 19/58 (32%), Positives = 28/58 (48%)
 Frame = -1

Query: 351 VEGXDLGLRWRSAASPSLQGPCWPAPACYLFRIRSYLHLGELPYWSYADLPRLPYTAR 178
           V G  L L+ + AASP+L GP W     +    R YL  G+ P      L  +P+ ++
Sbjct: 492 VVGYVLPLKAKEAASPALAGPKWSTGPWFFRDERMYLMPGDSPMGYRLPLDSVPWVSK 549


>UniRef50_Q5JM77 Cluster: Putative uncharacterized protein
           OSJNBb0036G09.7; n=3; Oryza sativa|Rep: Putative
           uncharacterized protein OSJNBb0036G09.7 - Oryza sativa
           subsp. japonica (Rice)
          Length = 323

 Score = 33.1 bits (72), Expect = 2.6
 Identities = 22/65 (33%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
 Frame = +3

Query: 111 TRXNAMVQGPYTCEQQASRTPTSVLCKVNEVSPRNSSKEARPGGG-KT*S*TSNKLEQAN 287
           TR  A V GP      +SR  TS  C+ +   PR S+  A   GG      +S+  E   
Sbjct: 208 TRARASVSGPCRAPPPSSRRGTSQSCRYSFELPRGSTASAATDGGFAVVKRSSDPYEDFR 267

Query: 288 KDLEE 302
           K +EE
Sbjct: 268 KSMEE 272


>UniRef50_Q6C1Q6 Cluster: Similarity; n=1; Yarrowia lipolytica|Rep:
           Similarity - Yarrowia lipolytica (Candida lipolytica)
          Length = 192

 Score = 32.3 bits (70), Expect = 4.6
 Identities = 19/68 (27%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
 Frame = +3

Query: 123 AMVQGPYTCEQQASRTPTSVLCKVNEVSPRNSSKEARPGGGKT*S*TSN--KLEQANKDL 296
           ++V G  T   ++S  P S +  + ++SP+N++   RPG   T    S   K+E++ + L
Sbjct: 5   SIVPGLLTVISESSLNPASQVLHMADISPKNTTGGPRPGPLTTDPPPSGDFKVEESIQQL 64

Query: 297 EEKEKQLT 320
           ++ ++Q+T
Sbjct: 65  KDLQQQIT 72


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 364,651,951
Number of Sequences: 1657284
Number of extensions: 6375183
Number of successful extensions: 18860
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 18267
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18854
length of database: 575,637,011
effective HSP length: 93
effective length of database: 421,509,599
effective search space used: 21496989549
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)