Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31710
         (435 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb...    25   3.8  
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M...    25   3.8  
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    25   5.0  

>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1334

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +3

Query: 141  YTCEQQASRTPTSVLCKVNEVSPRNSSKE 227
            Y C+Q+     TSV+C +   S    +KE
Sbjct: 1301 YACDQRGENCETSVVCSLRLTSAAAHAKE 1329


>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 500

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 15/57 (26%), Positives = 25/57 (43%)
 Frame = +3

Query: 198 EVSPRNSSKEARPGGGKT*S*TSNKLEQANKDLEEKEKQLTATVSRGRCPQQESAAD 368
           +VSP+ S KEA+       S  S K ++ +K  EE   +  +  S        S ++
Sbjct: 48  DVSPKKSKKEAKRASSPEPSKKSVKKQKKSKKKEESSSESESESSSSESESSSSESE 104


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1957

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = +1

Query: 334 EVXALNRKVQQIEEDL*KSEE 396
           +V +L + +Q ++EDL KSEE
Sbjct: 683 DVDSLEKNIQTLKEDLRKSEE 703


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,416,292
Number of Sequences: 5004
Number of extensions: 23678
Number of successful extensions: 56
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 156095170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)