Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31710
(435 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_48374| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.2
SB_14328| Best HMM Match : F-box (HMM E-Value=6.6e-09) 29 2.2
SB_23775| Best HMM Match : Tropomyosin (HMM E-Value=0) 28 2.9
SB_44749| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.8
SB_51082| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.0
SB_47409| Best HMM Match : Ldl_recept_a (HMM E-Value=1.2e-17) 27 6.7
SB_29421| Best HMM Match : N_methyl (HMM E-Value=0.58) 27 6.7
SB_3408| Best HMM Match : FG-GAP (HMM E-Value=0.098) 27 6.7
SB_36850| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.8
SB_13398| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.8
>SB_48374| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 573
Score = 28.7 bits (61), Expect = 2.2
Identities = 17/59 (28%), Positives = 29/59 (49%)
Frame = -1
Query: 339 DLGLRWRSAASPSLQGPCWPAPACYLFRIRSYLHLGELPYWSYADLPRLPYTARRLASY 163
D+ R RS SL+ P +C++FR+ + + G S+ L R + RRL ++
Sbjct: 393 DVTSRLRSCRGNSLE----PCGSCFVFRVHTLVPAGSYSNVSHQSLIRRSFRLRRLRAF 447
>SB_14328| Best HMM Match : F-box (HMM E-Value=6.6e-09)
Length = 425
Score = 28.7 bits (61), Expect = 2.2
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Frame = -1
Query: 333 GLRWRSAASPSLQGPCW--PAPACYLFRIRSYLHLGEL 226
G R A+ SL+G CW L ++ SYL LGEL
Sbjct: 14 GKEKRQEAAESLEGFCWFICLDEAVLLKVFSYLRLGEL 51
>SB_23775| Best HMM Match : Tropomyosin (HMM E-Value=0)
Length = 442
Score = 28.3 bits (60), Expect = 2.9
Identities = 13/34 (38%), Positives = 22/34 (64%)
Frame = +1
Query: 334 EVXALNRKVQQIEEDL*KSEERSGTAQQKLLVAQ 435
EV AL +++QQ+E+DL +E + Q +L A+
Sbjct: 42 EVAALTKQLQQLEDDLDAAESKLADTQGQLTEAE 75
>SB_44749| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2250
Score = 27.9 bits (59), Expect = 3.8
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 7/45 (15%)
Frame = -1
Query: 324 WRSAASPSLQ-------GPCWPAPACYLFRIRSYLHLGELPYWSY 211
WRS +S L+ GPCW YL+R R +L P + +
Sbjct: 1915 WRSGSSWILRAYICYYLGPCWSGHYLYLYRSRDHLTHSHYPEYGH 1959
>SB_51082| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1529
Score = 27.5 bits (58), Expect = 5.0
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = -3
Query: 214 LRGLTSFTLHSTEVGVLLACCSQVYGPCTMALXLVPAYIAC-IFLX*YAYHGGGLFVVT 41
L+ L S+T S EVG+++ ++ L +P I + +A GGG FV++
Sbjct: 1105 LKKLASYTAESAEVGIIIPLDVDIFKSGRYLLSGIPMKIRMEMSKPNFALMGGGKFVIS 1163
>SB_47409| Best HMM Match : Ldl_recept_a (HMM E-Value=1.2e-17)
Length = 1571
Score = 27.1 bits (57), Expect = 6.7
Identities = 20/84 (23%), Positives = 32/84 (38%), Gaps = 1/84 (1%)
Frame = +3
Query: 87 NMQAM*AGTRXNAMVQGPYTCEQQASRTPTSV-LCKVNEVSPRNSSKEARPGGGKT*S*T 263
N M AG + ++ PY EQ + PT + + + VSP S+ + T
Sbjct: 930 NATEMPAGVTTDQLLTSPYVTEQDTTGAPTDMPITRYQVVSPITSTSVPEQNATVLPATT 989
Query: 264 SNKLEQANKDLEEKEKQLTATVSR 335
L + + E TA +R
Sbjct: 990 FQSLNKTTTEESVVEPNATAVPTR 1013
>SB_29421| Best HMM Match : N_methyl (HMM E-Value=0.58)
Length = 534
Score = 27.1 bits (57), Expect = 6.7
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = -2
Query: 266 TCSGSGLTSTWASFLTGVTRTYLVYLTQHGGWRPTSLLFAGVRXLY 129
+ S L + W+ FL G L + G P++ FAG + LY
Sbjct: 264 SADNSALRAVWSLFLPGPGDVILRIRGEGAGAAPSACTFAGEQTLY 309
>SB_3408| Best HMM Match : FG-GAP (HMM E-Value=0.098)
Length = 451
Score = 27.1 bits (57), Expect = 6.7
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +2
Query: 77 SXKEYAGDVSWXKXQCHGTRXVHLRTAG**DANLRAV*GKRGKS 208
S + +AG+V W + Q R + LR A D N++ ++GK+
Sbjct: 68 SNQYHAGEVRWEQYQASVLRSLPLRWAHPSDTNMKIADFRKGKT 111
>SB_36850| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1008
Score = 26.6 bits (56), Expect = 8.8
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = -1
Query: 306 PSLQGPCWPAPACYLFRIRSYLHLGELPYWSYADLPRLPYT 184
PS+ GP + P I + L ELP+ + +P L T
Sbjct: 770 PSMPGPAFQVPQLAGMVIPGFTGLPELPFLGFLGMPPLQNT 810
>SB_13398| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2149
Score = 26.6 bits (56), Expect = 8.8
Identities = 17/51 (33%), Positives = 25/51 (49%)
Frame = +3
Query: 234 PGGGKT*S*TSNKLEQANKDLEEKEKQLTATVSRGRCPQQESAAD*GRPLE 386
PGG T + T E+ +DLE ++K++ QQE A RPL+
Sbjct: 844 PGGSSTEAGTGPSREELERDLESRKKEVNQYKKIINEQQQELAK--SRPLD 892
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,509,454
Number of Sequences: 59808
Number of extensions: 197314
Number of successful extensions: 572
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 537
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 572
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 834771332
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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