Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31710
(435 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
D38542-1|BAA07545.1| 256|Caenorhabditis elegans CeTMIII protein. 36 0.013
D38539-3|BAA07542.1| 256|Caenorhabditis elegans CeTMIII protein. 36 0.013
AL132877-5|CAD45604.1| 256|Caenorhabditis elegans Hypothetical ... 36 0.013
AL132877-3|CAC70115.1| 256|Caenorhabditis elegans Hypothetical ... 36 0.013
AF298180-1|AAG10302.1| 256|Caenorhabditis elegans tropomyosin i... 36 0.013
D38541-1|BAA07544.1| 284|Caenorhabditis elegans CeTMII protein. 32 0.21
D38540-1|BAA07543.1| 284|Caenorhabditis elegans CeTMI protein. 32 0.21
D38539-2|BAA07541.1| 284|Caenorhabditis elegans CeTMII protein. 32 0.21
D38539-1|BAA07540.1| 284|Caenorhabditis elegans CeTMI protein. 32 0.21
AL132877-4|CAC70112.1| 284|Caenorhabditis elegans Hypothetical ... 32 0.21
AL132877-1|CAC70114.1| 284|Caenorhabditis elegans Hypothetical ... 32 0.21
AF039040-2|AAO91670.1| 615|Caenorhabditis elegans Hypothetical ... 30 0.83
AF039040-1|AAB94184.1| 553|Caenorhabditis elegans Hypothetical ... 30 0.83
AL117195-19|CAB55031.1| 269|Caenorhabditis elegans Hypothetical... 29 1.1
AF040655-12|AAB95039.1| 507|Caenorhabditis elegans Hypothetical... 27 4.4
>D38542-1|BAA07545.1| 256|Caenorhabditis elegans CeTMIII protein.
Length = 256
Score = 35.9 bits (79), Expect = 0.013
Identities = 17/31 (54%), Positives = 23/31 (74%)
Frame = +1
Query: 331 AEVXALNRKVQQIEEDL*KSEERSGTAQQKL 423
AEV ALNR++ +EEDL ++E+R TA KL
Sbjct: 55 AEVAALNRRIVLVEEDLERTEDRLKTATSKL 85
>D38539-3|BAA07542.1| 256|Caenorhabditis elegans CeTMIII protein.
Length = 256
Score = 35.9 bits (79), Expect = 0.013
Identities = 17/31 (54%), Positives = 23/31 (74%)
Frame = +1
Query: 331 AEVXALNRKVQQIEEDL*KSEERSGTAQQKL 423
AEV ALNR++ +EEDL ++E+R TA KL
Sbjct: 55 AEVAALNRRIVLVEEDLERTEDRLKTATSKL 85
>AL132877-5|CAD45604.1| 256|Caenorhabditis elegans Hypothetical
protein Y105E8B.1e protein.
Length = 256
Score = 35.9 bits (79), Expect = 0.013
Identities = 17/31 (54%), Positives = 23/31 (74%)
Frame = +1
Query: 331 AEVXALNRKVQQIEEDL*KSEERSGTAQQKL 423
AEV ALNR++ +EEDL ++E+R TA KL
Sbjct: 55 AEVAALNRRIVLVEEDLERTEDRLKTATSKL 85
>AL132877-3|CAC70115.1| 256|Caenorhabditis elegans Hypothetical
protein Y105E8B.1c protein.
Length = 256
Score = 35.9 bits (79), Expect = 0.013
Identities = 17/31 (54%), Positives = 23/31 (74%)
Frame = +1
Query: 331 AEVXALNRKVQQIEEDL*KSEERSGTAQQKL 423
AEV ALNR++ +EEDL ++E+R TA KL
Sbjct: 55 AEVAALNRRIVLVEEDLERTEDRLKTATSKL 85
>AF298180-1|AAG10302.1| 256|Caenorhabditis elegans tropomyosin
isoform IV protein.
Length = 256
Score = 35.9 bits (79), Expect = 0.013
Identities = 17/31 (54%), Positives = 23/31 (74%)
Frame = +1
Query: 331 AEVXALNRKVQQIEEDL*KSEERSGTAQQKL 423
AEV ALNR++ +EEDL ++E+R TA KL
Sbjct: 55 AEVAALNRRIVLVEEDLERTEDRLKTATSKL 85
>D38541-1|BAA07544.1| 284|Caenorhabditis elegans CeTMII protein.
Length = 284
Score = 31.9 bits (69), Expect = 0.21
Identities = 15/31 (48%), Positives = 23/31 (74%)
Frame = +1
Query: 331 AEVXALNRKVQQIEEDL*KSEERSGTAQQKL 423
AEV +LNR++ +EE+L ++EER A +KL
Sbjct: 83 AEVASLNRRMTLLEEELERAEERLKIATEKL 113
>D38540-1|BAA07543.1| 284|Caenorhabditis elegans CeTMI protein.
Length = 284
Score = 31.9 bits (69), Expect = 0.21
Identities = 15/31 (48%), Positives = 23/31 (74%)
Frame = +1
Query: 331 AEVXALNRKVQQIEEDL*KSEERSGTAQQKL 423
AEV +LNR++ +EE+L ++EER A +KL
Sbjct: 83 AEVASLNRRMTLLEEELERAEERLKIATEKL 113
>D38539-2|BAA07541.1| 284|Caenorhabditis elegans CeTMII protein.
Length = 284
Score = 31.9 bits (69), Expect = 0.21
Identities = 15/31 (48%), Positives = 23/31 (74%)
Frame = +1
Query: 331 AEVXALNRKVQQIEEDL*KSEERSGTAQQKL 423
AEV +LNR++ +EE+L ++EER A +KL
Sbjct: 83 AEVASLNRRMTLLEEELERAEERLKIATEKL 113
>D38539-1|BAA07540.1| 284|Caenorhabditis elegans CeTMI protein.
Length = 284
Score = 31.9 bits (69), Expect = 0.21
Identities = 15/31 (48%), Positives = 23/31 (74%)
Frame = +1
Query: 331 AEVXALNRKVQQIEEDL*KSEERSGTAQQKL 423
AEV +LNR++ +EE+L ++EER A +KL
Sbjct: 83 AEVASLNRRMTLLEEELERAEERLKIATEKL 113
>AL132877-4|CAC70112.1| 284|Caenorhabditis elegans Hypothetical
protein Y105E8B.1d protein.
Length = 284
Score = 31.9 bits (69), Expect = 0.21
Identities = 15/31 (48%), Positives = 23/31 (74%)
Frame = +1
Query: 331 AEVXALNRKVQQIEEDL*KSEERSGTAQQKL 423
AEV +LNR++ +EE+L ++EER A +KL
Sbjct: 83 AEVASLNRRMTLLEEELERAEERLKIATEKL 113
>AL132877-1|CAC70114.1| 284|Caenorhabditis elegans Hypothetical
protein Y105E8B.1a protein.
Length = 284
Score = 31.9 bits (69), Expect = 0.21
Identities = 15/31 (48%), Positives = 23/31 (74%)
Frame = +1
Query: 331 AEVXALNRKVQQIEEDL*KSEERSGTAQQKL 423
AEV +LNR++ +EE+L ++EER A +KL
Sbjct: 83 AEVASLNRRMTLLEEELERAEERLKIATEKL 113
>AF039040-2|AAO91670.1| 615|Caenorhabditis elegans Hypothetical
protein T22B11.4b protein.
Length = 615
Score = 29.9 bits (64), Expect = 0.83
Identities = 21/79 (26%), Positives = 32/79 (40%), Gaps = 1/79 (1%)
Frame = +3
Query: 3 QPVRVGVFNSTGTVTTKSPPPWYAYQXRNMQAM*AGTRXNAMVQGPYTCEQQASRTPTSV 182
QP+ V N +V P W R+++ V+ P CE + TPT V
Sbjct: 127 QPLAV---NENSSVVVTIEPFWLEPYWRHLKIENVTLHYKFQVKAPEHCEGEVESTPTGV 183
Query: 183 -LCKVNEVSPRNSSKEARP 236
C + + + SKE +P
Sbjct: 184 HTCVASVLVDLSESKEDQP 202
>AF039040-1|AAB94184.1| 553|Caenorhabditis elegans Hypothetical
protein T22B11.4a protein.
Length = 553
Score = 29.9 bits (64), Expect = 0.83
Identities = 21/79 (26%), Positives = 32/79 (40%), Gaps = 1/79 (1%)
Frame = +3
Query: 3 QPVRVGVFNSTGTVTTKSPPPWYAYQXRNMQAM*AGTRXNAMVQGPYTCEQQASRTPTSV 182
QP+ V N +V P W R+++ V+ P CE + TPT V
Sbjct: 127 QPLAV---NENSSVVVTIEPFWLEPYWRHLKIENVTLHYKFQVKAPEHCEGEVESTPTGV 183
Query: 183 -LCKVNEVSPRNSSKEARP 236
C + + + SKE +P
Sbjct: 184 HTCVASVLVDLSESKEDQP 202
>AL117195-19|CAB55031.1| 269|Caenorhabditis elegans Hypothetical
protein Y57A10A.26 protein.
Length = 269
Score = 29.5 bits (63), Expect = 1.1
Identities = 8/23 (34%), Positives = 17/23 (73%)
Frame = -1
Query: 288 CWPAPACYLFRIRSYLHLGELPY 220
C P+P+ Y F++ ++L + ++PY
Sbjct: 26 CIPSPSPYAFKVETFLRVADIPY 48
>AF040655-12|AAB95039.1| 507|Caenorhabditis elegans Hypothetical
protein T24E12.1 protein.
Length = 507
Score = 27.5 bits (58), Expect = 4.4
Identities = 20/77 (25%), Positives = 31/77 (40%)
Frame = +3
Query: 78 QXRNMQAM*AGTRXNAMVQGPYTCEQQASRTPTSVLCKVNEVSPRNSSKEARPGGGKT*S 257
Q R + ++ A R E QA R P S + KVN SP + + P
Sbjct: 49 QARRIFSLEATVRAQTQELKQLKAEVQALRQPNSPVSKVNMNSPESGISSSSPSSSTCLE 108
Query: 258 *TSNKLEQANKDLEEKE 308
+S + E + + EK+
Sbjct: 109 KSSEEPEDLDAVVYEKD 125
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,121,397
Number of Sequences: 27780
Number of extensions: 142977
Number of successful extensions: 381
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 371
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 381
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 735312162
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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