Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31710
         (435 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    23   1.1  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    23   2.0  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    21   4.5  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    21   6.0  

>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 23.4 bits (48), Expect = 1.1
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = -2

Query: 248 LTSTWASFLTGVTRTYLVYLTQH 180
           L+S W   +  V  T L+++T H
Sbjct: 3   LSSAWFEVIAAVLLTILIFVTSH 25


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 22.6 bits (46), Expect = 2.0
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +3

Query: 42  VTTKSPPPW 68
           V TK PPPW
Sbjct: 120 VATKEPPPW 128


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -3

Query: 148 QVYGPCTMALXL 113
           QVYGPC + + L
Sbjct: 219 QVYGPCVLLVVL 230


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.0 bits (42), Expect = 6.0
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +2

Query: 62  TMVRVSXKEYAGDVSW 109
           T++  +  +Y GDVSW
Sbjct: 133 TLMTKATLKYTGDVSW 148


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 99,454
Number of Sequences: 438
Number of extensions: 1597
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 11368164
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)