Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31710
         (435 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g55820.1 68418.m06956 expressed protein                             30   0.59 
At3g47890.1 68416.m05222 ubiquitin carboxyl-terminal hydrolase-r...    29   1.4  
At5g02170.1 68418.m00138 amino acid transporter family protein b...    27   5.5  
At5g51230.2 68418.m06353 embryonic flower 2 (EMF2) identical to ...    27   7.2  
At5g51230.1 68418.m06352 embryonic flower 2 (EMF2) identical to ...    27   7.2  
At4g03560.1 68417.m00488 two-pore calcium channel (TPC1) identic...    27   7.2  
At3g20380.1 68416.m02582 meprin and TRAF homology domain-contain...    27   7.2  
At1g18330.1 68414.m02290 myb family transcription factor contain...    27   7.2  

>At5g55820.1 68418.m06956 expressed protein
          Length = 1826

 Score = 30.3 bits (65), Expect = 0.59
 Identities = 22/68 (32%), Positives = 32/68 (47%)
 Frame = +3

Query: 153  QQASRTPTSVLCKVNEVSPRNSSKEARPGGGKT*S*TSNKLEQANKDLEEKEKQLTATVS 332
            Q  SR P +V  K N     N+S+ +R    K  S   N  E+AN  +EE E+  +  +S
Sbjct: 1671 QANSRIP-AVRSKSNSSDDTNASRSSRENDFKVISNPGNMSEEANMGIEEMEE--SYNIS 1727

Query: 333  RGRCPQQE 356
              +C   E
Sbjct: 1728 PYKCSDDE 1735


>At3g47890.1 68416.m05222 ubiquitin carboxyl-terminal
           hydrolase-related contains Pfam profiles PF00443:
           Ubiquitin carboxyl-terminal hydrolase, PF04780: Protein
           of unknown function (DUF629), PF04781: Protein of
           unknown function (DUF627)
          Length = 1568

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 12/34 (35%), Positives = 22/34 (64%)
 Frame = +3

Query: 267 NKLEQANKDLEEKEKQLTATVSRGRCPQQESAAD 368
           N++++ANK +EE  K++   V+  R  QQ+S  +
Sbjct: 212 NEIKKANKSIEEIRKEVEVRVAAARLLQQKSECE 245


>At5g02170.1 68418.m00138 amino acid transporter family protein
           belongs to INTERPRO:IPR002422 amino acid/polyamine
           transporter, family II
          Length = 526

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
 Frame = -2

Query: 266 TCSGSGLTSTWASFLTGVTRTYLVYLTQHGGWRPTSLLFA-GVRXLYHGIV 117
           +C+ S       + L GV    + Y  + GGW    +LF+ G+   Y GI+
Sbjct: 134 SCTFSQSVLNGINVLCGVALLTMPYAVKEGGWLGLFILFSFGIITFYTGIL 184


>At5g51230.2 68418.m06353 embryonic flower 2 (EMF2) identical to
           embryonic flower 2 [Arabidopsis thaliana] GI:14276050;
           supporting cDNA gi|14276049|dbj|AB053171.1|
          Length = 626

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 6/36 (16%)
 Frame = -2

Query: 140 RXLYHGIVP--CXSLHRLHIPXLIRVP---W-WRTF 51
           R L  G +P  C +  RLH P ++R P   W WR F
Sbjct: 564 RVLADGHIPWACEAFSRLHGPIMVRTPHLIWCWRVF 599


>At5g51230.1 68418.m06352 embryonic flower 2 (EMF2) identical to
           embryonic flower 2 [Arabidopsis thaliana] GI:14276050;
           supporting cDNA gi|14276049|dbj|AB053171.1|
          Length = 631

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 6/36 (16%)
 Frame = -2

Query: 140 RXLYHGIVP--CXSLHRLHIPXLIRVP---W-WRTF 51
           R L  G +P  C +  RLH P ++R P   W WR F
Sbjct: 569 RVLADGHIPWACEAFSRLHGPIMVRTPHLIWCWRVF 604


>At4g03560.1 68417.m00488 two-pore calcium channel (TPC1) identical
           to two-pore calcium channel (TPC1) [Arabidopsis
           thaliana] gi|14041819|dbj|BAB55460
          Length = 733

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -1

Query: 282 PAPACYLFRIRSYLHLGELPYWSYAD 205
           P P+C   + R Y +LGELPY + A+
Sbjct: 97  PKPSC---KDRDYYYLGELPYLTNAE 119


>At3g20380.1 68416.m02582 meprin and TRAF homology domain-containing
           protein / MATH domain-containing protein weak similarity
           to ubiquitin-specific protease 12 [Arabidopsis thaliana]
           GI:11993471; contains Pfam profile PF00917: MATH domain
          Length = 375

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = -1

Query: 330 LRWRSAASPSLQGPCWPAPACYLFRIRSYLHLGELPYWSYADLP 199
           L ++ +AS  ++G     P+ Y F+I SY    ++PY  +   P
Sbjct: 68  LDYKVSASNIVKGLTEVPPSSYSFKIESYNSFLKIPYLGFESRP 111


>At1g18330.1 68414.m02290 myb family transcription factor contains
           Pfam profile: PF00249 myb-like DNA-binding domain
          Length = 346

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 2/61 (3%)
 Frame = +3

Query: 51  KSPPPWYAYQXRNMQAM*AGTRXNAMVQGPYTCEQQASR--TPTSVLCKVNEVSPRNSSK 224
           KSP P+      N+ AM  GT+    V   +  E Q +R  +P S    +  +   +  K
Sbjct: 131 KSPVPYTQSPPPNLSAMEKGTKSPTSVLSSFGSEDQVNRCSSPNSCTSDIQSIGATSIDK 190

Query: 225 E 227
           +
Sbjct: 191 K 191


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,804,094
Number of Sequences: 28952
Number of extensions: 136444
Number of successful extensions: 683
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 450
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 683
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 683042040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)