Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31708
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar...    30   0.18 
SPAC1F12.09 |gpi17||pig-S|Schizosaccharomyces pombe|chr 1|||Manual     28   0.72 
SPAC57A10.02 |cdr2||GIN4 family protein kinase Cdr2|Schizosaccha...    27   1.3  
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   1.7  
SPBC23G7.13c |||urea transporter |Schizosaccharomyces pombe|chr ...    26   3.8  
SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr...    25   5.1  
SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1 re...    25   6.7  
SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyc...    25   6.7  
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni...    25   8.9  
SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78 |Schizosacch...    25   8.9  
SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|...    25   8.9  

>SPBC23G7.08c |rga7||GTPase activating protein
           Rga7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 30.3 bits (65), Expect = 0.18
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = +3

Query: 123 TLPGKYSTA*RTKRPHSDPPSLTASNRVSRTWTPASVS 236
           TLP   +T  +T R  + PPS   SNR +  + P SVS
Sbjct: 455 TLPPIQTTTIQTSREVAPPPSSINSNRAASPFRPTSVS 492


>SPAC1F12.09 |gpi17||pig-S|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 554

 Score = 28.3 bits (60), Expect = 0.72
 Identities = 13/46 (28%), Positives = 21/46 (45%)
 Frame = +2

Query: 155 NKKTSFGSTLLDCIQSGVENLDSGVGIYAPDAESYSVFAELFDPII 292
           N+  S+ +      Q  + +      IY PD   Y ++A LF PI+
Sbjct: 479 NEALSYSNNAFSKSQEALFHPSMVTTIYFPDESKYGIYAPLFAPIL 524


>SPAC57A10.02 |cdr2||GIN4 family protein kinase
           Cdr2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
 Frame = -3

Query: 163 LFVLQAVEYFPGKVLLQQRLRVGSLELAETSLQFLEG--CGVDHC 35
           LFV+  VEY PG  L    LR GS    +T+ +FL    CG+++C
Sbjct: 83  LFVV--VEYMPGGELFDCMLRKGSFTEQDTA-KFLWQILCGLEYC 124


>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 536

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +3

Query: 153 RTKRPHSDPPSLTASNRVSRTWTPASVS 236
           R  RP  +PP L+ASN    T  P++ S
Sbjct: 391 RMVRPIGNPPDLSASNEAEATMPPSNGS 418


>SPBC23G7.13c |||urea transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 664

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 20/51 (39%), Positives = 25/51 (49%)
 Frame = -1

Query: 168 EVFLFFRLSNTSLVRYFFSSDLESDPWSLLKPASNFSRVAASTIVAAFLAL 16
           E + F RL  T    +F S + E      L  AS  S+VAA  I AAF+ L
Sbjct: 518 EKYDFNRLLAT-FAMHFSSEEDEIQQTKKLNRASVISKVAALIITAAFIIL 567


>SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1516

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -1

Query: 138 TSLVRYFFSSDLESDPWSLLKPASNFSRVAASTIVAAFL 22
           +SLV++     ++     +LKP + F  V A   VA FL
Sbjct: 384 SSLVKWLTKRKIKMASEGILKPLNEFQAVVARDSVAKFL 422


>SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1
           related|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 773

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 25/80 (31%), Positives = 34/80 (42%), Gaps = 10/80 (12%)
 Frame = +2

Query: 149 LKNKKTSFGSTLLDCIQSGVENLDSGVGIYAPDAES------YSVFAELFDPIIE----D 298
           L  + TS GS L     S  EN D  +  +A D E        S F+    PI      D
Sbjct: 532 LTTQYTSVGSNLQSSDLSAHENTDE-LFYFAWDNEKPMRKKLVSSFSIANRPISNGEYLD 590

Query: 299 YHNGXKKTDKHPPKNWGDVD 358
           + N   KT++  PK W ++D
Sbjct: 591 FINKKSKTERVYPKQWAEID 610


>SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1050

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +2

Query: 332 PPKNWGDV 355
           PPKNWGDV
Sbjct: 521 PPKNWGDV 528


>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
            Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2199

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -1

Query: 234  IPTPESKFSTPDWMQSR 184
            I  P ++F  PDW+Q R
Sbjct: 1152 ISNPVTRFPLPDWLQKR 1168


>SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 803

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 23/88 (26%), Positives = 36/88 (40%), Gaps = 1/88 (1%)
 Frame = +2

Query: 17  SARKAATMVDAATLEKLEAGFSKLQGSDSKSLLKKYLTREVFDSLKNKKTSFGSTLLDCI 196
           S RK          EKLE+  + L+    K        R++ DS+K  KT      ++  
Sbjct: 361 SLRKETDTTSVERREKLESKLTDLKEEQDKLSAAWEEERKLLDSIKKAKTELEQARIELE 420

Query: 197 QSGVENLDSGVGIYAPDAE-SYSVFAEL 277
           ++  E      G YA  +E  Y++  EL
Sbjct: 421 RTQRE------GNYARASELQYAIIPEL 442


>SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 664

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = -1

Query: 135 SLVRYFFSSDLESDPWSLLK-PASNFSRVAASTIVAAFLALEQP 7
           S++R F   D++  P      P+S  S +A ST+ A  L  +QP
Sbjct: 188 SIIRSF--PDIQKQPKGFFSYPSSTVSSIAPSTLEAGNLHSQQP 229


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,878,178
Number of Sequences: 5004
Number of extensions: 35855
Number of successful extensions: 144
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)