Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31708
(516 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g30710.2 68417.m04353 expressed protein contains Pfam domain,... 31 0.61
At4g30710.1 68417.m04352 expressed protein contains Pfam domain,... 31 0.61
At1g18420.1 68414.m02300 expressed protein contains Pfam profile... 31 0.61
At1g69420.2 68414.m07975 zinc finger (DHHC type) family protein ... 29 2.5
At1g69420.1 68414.m07974 zinc finger (DHHC type) family protein ... 29 2.5
At5g47030.1 68418.m05796 ATP synthase delta' chain, mitochondria... 28 4.3
At4g31070.1 68417.m04411 pentatricopeptide (PPR) repeat-containi... 27 7.5
At3g19840.1 68416.m02513 FF domain-containing protein / WW domai... 27 7.5
At4g38890.1 68417.m05508 dihydrouridine synthase family protein ... 27 9.9
>At4g30710.2 68417.m04353 expressed protein contains Pfam domain,
PF04484: Family of unknown function (DUF566)
Length = 644
Score = 30.7 bits (66), Expect = 0.61
Identities = 28/82 (34%), Positives = 42/82 (51%), Gaps = 6/82 (7%)
Frame = +3
Query: 24 EKPQQWSTPQPSRNWRLVSASSRDPTLSRC*RSTLPGKYSTA*RTKRPHSDPPSLTASNR 203
E ++ +P P++N R S S PT+S +S + K + + KRP S PPS T+ +
Sbjct: 31 EVSSRYRSPTPTKNGRCPSPSVTRPTVSSSSQS-VAAKRAVSAERKRP-STPPSPTSPST 88
Query: 204 VSRTWT---PAS---VSTRRTP 251
R + PAS +ST R P
Sbjct: 89 PIRDLSIDLPASSRRLSTGRLP 110
>At4g30710.1 68417.m04352 expressed protein contains Pfam domain,
PF04484: Family of unknown function (DUF566)
Length = 644
Score = 30.7 bits (66), Expect = 0.61
Identities = 28/82 (34%), Positives = 42/82 (51%), Gaps = 6/82 (7%)
Frame = +3
Query: 24 EKPQQWSTPQPSRNWRLVSASSRDPTLSRC*RSTLPGKYSTA*RTKRPHSDPPSLTASNR 203
E ++ +P P++N R S S PT+S +S + K + + KRP S PPS T+ +
Sbjct: 31 EVSSRYRSPTPTKNGRCPSPSVTRPTVSSSSQS-VAAKRAVSAERKRP-STPPSPTSPST 88
Query: 204 VSRTWT---PAS---VSTRRTP 251
R + PAS +ST R P
Sbjct: 89 PIRDLSIDLPASSRRLSTGRLP 110
>At1g18420.1 68414.m02300 expressed protein contains Pfam profile
PF01027: Uncharacterized protein family UPF0005
Length = 581
Score = 30.7 bits (66), Expect = 0.61
Identities = 12/27 (44%), Positives = 13/27 (48%)
Frame = +2
Query: 302 HNGXKKTDKHPPKNWGDVDTLGNLDPA 382
H + PPKNW DV T NL A
Sbjct: 470 HKSQSEATLRPPKNWDDVTTAANLSSA 496
>At1g69420.2 68414.m07975 zinc finger (DHHC type) family protein
contains Pfam profile: PF01529: DHHC zinc finger domain
Length = 596
Score = 28.7 bits (61), Expect = 2.5
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +2
Query: 5 DGCSSARKAATMVDAATLEKLEAGFS-KLQGSDSKSLLK 118
DGC SA A D +E E G + KL+ S+ SLL+
Sbjct: 96 DGCGSATGGAKSHDGTCVEDTENGSNKKLESSERSSLLR 134
>At1g69420.1 68414.m07974 zinc finger (DHHC type) family protein
contains Pfam profile: PF01529: DHHC zinc finger domain
Length = 596
Score = 28.7 bits (61), Expect = 2.5
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +2
Query: 5 DGCSSARKAATMVDAATLEKLEAGFS-KLQGSDSKSLLK 118
DGC SA A D +E E G + KL+ S+ SLL+
Sbjct: 96 DGCGSATGGAKSHDGTCVEDTENGSNKKLESSERSSLLR 134
>At5g47030.1 68418.m05796 ATP synthase delta' chain, mitochondrial
identical to SP|Q96252 ATP synthase delta' chain,
mitochondrial precursor (EC 3.6.3.14) {Arabidopsis
thaliana}; contains Pfam profile PF02823: ATP synthase,
Delta/Epsilon chain, beta-sandwich domain
Length = 203
Score = 27.9 bits (59), Expect = 4.3
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +3
Query: 120 STLPGKYSTA*RTKRPHSDPPSLTASNRVSRTWTPASVSTRRT 248
STL + A + P+ DPP ++ R TP+S+ T+ T
Sbjct: 32 STLDSTFVEAWKKVAPNMDPPQTPSAFMKPRPSTPSSIPTKLT 74
>At4g31070.1 68417.m04411 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 613
Score = 27.1 bits (57), Expect = 7.5
Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +2
Query: 116 KKYLTREVFDSLKNKKT-SFGSTLLDCIQSGV 208
+KY R+VFD + ++ T S+ S + C Q G+
Sbjct: 97 RKYAVRKVFDEMLHRDTVSYCSIINSCCQDGL 128
>At3g19840.1 68416.m02513 FF domain-containing protein / WW
domain-containing protein weak similarity to
transcription factor CA150b [Mus musculus] GI:6329166;
contains Pfam profiles PF01846: FF domain, PF00397: WW
domain
Length = 743
Score = 27.1 bits (57), Expect = 7.5
Identities = 16/49 (32%), Positives = 27/49 (55%)
Frame = +2
Query: 89 QGSDSKSLLKKYLTREVFDSLKNKKTSFGSTLLDCIQSGVENLDSGVGI 235
+GSD SL ++ D+ K T+FGS+ LD ++ + DSG+ +
Sbjct: 263 KGSDLTSLSAPAISNGGRDAASLKTTNFGSSALDLVKKKLH--DSGMPV 309
>At4g38890.1 68417.m05508 dihydrouridine synthase family protein
contains Pfam domain, PF01207: Dihydrouridine synthase
(Dus)
Length = 700
Score = 26.6 bits (56), Expect = 9.9
Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Frame = +2
Query: 332 PPKNWG--DVDTLGNLDPAGEFVVSTRVRCGRSLEGYPFNP 448
PP +G D++TL + AG++V + + G+ EG+ F P
Sbjct: 647 PPSYFGRDDLETLMMSESAGDWVRISEMLLGKVPEGFTFAP 687
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,375,286
Number of Sequences: 28952
Number of extensions: 204311
Number of successful extensions: 774
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 762
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 774
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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