Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31705
         (394 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26A3.01 |sxa1|SPAC2E1P5.06|aspartic protease Sxa1 |Schizosac...    30   0.15 
SPAC17C9.07 |alg8||glucosyltransferase Alg8|Schizosaccharomyces ...    26   1.8  
SPBC776.15c |||dihydrolipoamide S-succinyltransferase, e2 compon...    25   4.2  
SPAC1A6.05c |||triacylglycerol lipase|Schizosaccharomyces pombe|...    25   5.5  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    24   7.3  
SPBC14F5.05c |sam1||S-adenosylmethionine synthetase |Schizosacch...    24   7.3  
SPAC4D7.08c |ade4|min13, aza1|amidophosphoribosyltransferase |Sc...    24   7.3  

>SPAC26A3.01 |sxa1|SPAC2E1P5.06|aspartic protease Sxa1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 533

 Score = 29.9 bits (64), Expect = 0.15
 Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 6/92 (6%)
 Frame = +1

Query: 115 ALIASSVMALYRVPLHR---MKTARTHFHEVGTELELLRL--KYDVTGPSPEPLSNYLDA 279
           AL AS   A   VP  R   +    + +  V  +LE  ++  K D +G     L  Y DA
Sbjct: 15  ALQASVASAYSEVPGKRSVVLNLQHSQYDHVARKLERTKVLNKRDSSGYPVLDLE-YTDA 73

Query: 280 Q-YYGVISIGTPPQSFKVVFDTGSCNLWVPSK 372
             Y+  +++G+  + + +  DTGS   WV +K
Sbjct: 74  GGYFANLTLGSNERVYSLTLDTGSPYTWVTAK 105


>SPAC17C9.07 |alg8||glucosyltransferase Alg8|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 501

 Score = 26.2 bits (55), Expect = 1.8
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +1

Query: 88  MGKISLFFLALIASSVMALYRVPLHRMKTARTH 186
           MGK+S+ + A IAS+ + ++  P +R      H
Sbjct: 1   MGKLSMLYNAAIASTFVKVFLFPSYRSTDFEVH 33


>SPBC776.15c |||dihydrolipoamide S-succinyltransferase, e2 component
           of oxoglutarate dehydrogenase complex
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 25.0 bits (52), Expect = 4.2
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +1

Query: 217 LRLKYDVTGPSPEPLSNYLDAQYYGVISIGTPP 315
           LR  Y VT P  + ++N L A+Y     I TPP
Sbjct: 18  LRSGYSVTAPVSKSMANVLWARYAST-RIKTPP 49


>SPAC1A6.05c |||triacylglycerol lipase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 483

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -1

Query: 145 IVPLRSWRSAPKKIKISFPLLFLEAATR 62
           I+P  ++R   K IK   P   L+AATR
Sbjct: 419 IIPRLNYREVNKVIKNPTPSFLLDAATR 446


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 24.2 bits (50), Expect = 7.3
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +2

Query: 50  VAESPSCGF*KQQWERYLYF 109
           V + P CGF    W  +L+F
Sbjct: 644 VGKGPGCGFWAPSWRVWLFF 663


>SPBC14F5.05c |sam1||S-adenosylmethionine synthetase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 382

 Score = 24.2 bits (50), Expect = 7.3
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -3

Query: 179 LAVFIRCNGTLYSAITELAISAKKNKDIFPIVVFRS 72
           L++F+   GT      EL    +KN D+ P V+ +S
Sbjct: 315 LSIFVNTYGTSSKTSAELVEIIRKNFDLRPGVLVKS 350


>SPAC4D7.08c |ade4|min13, aza1|amidophosphoribosyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 533

 Score = 24.2 bits (50), Expect = 7.3
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = -1

Query: 292 LRSTEHQDNLTMVRVKGQSHRILISTAPVQCQPHESG 182
           +R T  ++ + M R  G  +  L S AP+   PH  G
Sbjct: 387 VRGTTSREIVQMARESGAKNVYLASCAPMITHPHVYG 423


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,691,976
Number of Sequences: 5004
Number of extensions: 33339
Number of successful extensions: 75
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 130061696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)