Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31704
(449 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 243 9e-66
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 131 6e-32
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 117 7e-28
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 93 1e-20
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 83 2e-17
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 75 4e-15
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 67 1e-12
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 32 0.047
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 28 0.76
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 26 3.1
SPBC1683.09c |frp1||ferric-chelate reductase Frp1|Schizosaccharo... 25 4.1
SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pomb... 24 9.4
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 243 bits (595), Expect = 9e-66
Identities = 106/130 (81%), Positives = 116/130 (89%)
Frame = +1
Query: 52 DDDVAALVVDNGSGMCKXGFAGDDXPRAVXPSIXGRPRHXGVMVGMGHKDSYVGDEAXXK 231
++++AALV+DNGSGMCK GFAGDD PRAV PSI GRPRH G+MVGMG KDSYVGDEA K
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQKDSYVGDEAQSK 61
Query: 232 RGILTLKYPIEHGXITNWDDMEKIWHHTFYNELRVAPXEHPVLLTEXPLNPKANREKMTQ 411
RGILTLKYPIEHG + NWDDMEKIWHHTFYNELRVAP EHP LLTE PLNPK+NREKMTQ
Sbjct: 62 RGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPCLLTEAPLNPKSNREKMTQ 121
Query: 412 IMFETLNSPA 441
I+FET N+PA
Sbjct: 122 IIFETFNAPA 131
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 131 bits (316), Expect = 6e-32
Identities = 61/130 (46%), Positives = 82/130 (63%), Gaps = 1/130 (0%)
Frame = +1
Query: 58 DVAALVVDNGSGMCKXGFAGDDXPRAVXPSIXGRPRHXGVMVGMGHKDSYVGDEAXXKRG 237
D + +DNGSG K GFAGDD P+ + P+ GR +H VM KD +VG EA RG
Sbjct: 8 DNQPICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKDMFVGSEAQNLRG 67
Query: 238 ILTLKYPIEHGXITNWDDMEKIWHHTFYN-ELRVAPXEHPVLLTEXPLNPKANREKMTQI 414
+L ++ PIE G I NW DME+IW + + + +L P EHP+LLTE PL N+EK+ +
Sbjct: 68 LLKIQRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHPLLLTEPPLANIRNKEKIAEY 127
Query: 415 MFETLNSPAM 444
+ETLN PA+
Sbjct: 128 FYETLNVPAL 137
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 117 bits (282), Expect = 7e-28
Identities = 56/122 (45%), Positives = 80/122 (65%), Gaps = 2/122 (1%)
Frame = +1
Query: 64 AALVVDNGSGMCKXGFAGDDXPRAVXPSIXGRP--RHXGVMVGMGHKDSYVGDEAXXKRG 237
A +V+DNG+G K G+A D+ PR PSI GRP R + KD VGDEA R
Sbjct: 4 APIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRPILRAEEKTGNVQIKDVMVGDEAEAVRS 63
Query: 238 ILTLKYPIEHGXITNWDDMEKIWHHTFYNELRVAPXEHPVLLTEXPLNPKANREKMTQIM 417
+L +KYP+E+G I ++++M ++W +TF+ +L++ P +LLTE P+NP ANREKM + M
Sbjct: 64 LLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRKILLTEPPMNPVANREKMCETM 123
Query: 418 FE 423
FE
Sbjct: 124 FE 125
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 93.5 bits (222), Expect = 1e-20
Identities = 53/145 (36%), Positives = 74/145 (51%), Gaps = 24/145 (16%)
Frame = +1
Query: 70 LVVDNGSGMCKXGFAGDDXPRAVXPSIXG--------------RPRHXGVMVGMGHKDS- 204
+++DNG+G K G+AG+D P V P++ +P + G GH S
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVIATRSAGASSGPAVSSKPSYMASK-GSGHLSSK 66
Query: 205 --------YVGDEAXXKRGI-LTLKYPIEHGXITNWDDMEKIWHHTFYNELRVAPXEHPV 357
++G++A K +L YPI HG I NWD ME+ W + + LR P +H
Sbjct: 67 RATEDLDFFIGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYF 126
Query: 358 LLTEXPLNPKANREKMTQIMFETLN 432
LLTE PLNP NRE +IMFE+ N
Sbjct: 127 LLTEPPLNPPENRENTAEIMFESFN 151
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 83.0 bits (196), Expect = 2e-17
Identities = 44/129 (34%), Positives = 67/129 (51%)
Frame = +1
Query: 55 DDVAALVVDNGSGMCKXGFAGDDXPRAVXPSIXGRPRHXGVMVGMGHKDSYVGDEAXXKR 234
D+V+A+V+D GS + GF+G+D P+ V PS G + G + Y+
Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCGEFSDGRRLFG----EEYIYKSNPG-- 62
Query: 235 GILTLKYPIEHGXITNWDDMEKIWHHTFYNELRVAPXEHPVLLTEXPLNPKANREKMTQI 414
+ +K I +G + NWD +W + +L+ P EHP+L+TE NP NR K +
Sbjct: 63 --MEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITEPFDNPPENRVKTLET 120
Query: 415 MFETLNSPA 441
MFE+L PA
Sbjct: 121 MFESLRCPA 129
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 75.4 bits (177), Expect = 4e-15
Identities = 42/136 (30%), Positives = 74/136 (54%), Gaps = 1/136 (0%)
Frame = +1
Query: 40 FKMCDDDVAALVVDNGSGMCKXGFAGDDXPRAVXPSIXGRPRHXGVMVGMGHKDSYVGDE 219
F+ +D+ LV+DNGS + G+ G+ P+ V ++ R R + + VG++
Sbjct: 18 FQNVSNDIP-LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYRDRK----LSRTSTLVGND 72
Query: 220 AXXKRGILTL-KYPIEHGXITNWDDMEKIWHHTFYNELRVAPXEHPVLLTEXPLNPKANR 396
+ G ++ + P E I+NWD ME++ +TF +L + EHP+ +TE NP R
Sbjct: 73 TLIEVGSRSIARSPFERNVISNWDLMEQVLDYTFL-KLGIDRMEHPICMTEPLANPTYVR 131
Query: 397 EKMTQIMFETLNSPAM 444
MT+++FE N+P++
Sbjct: 132 STMTELLFELYNAPSV 147
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 66.9 bits (156), Expect = 1e-12
Identities = 37/131 (28%), Positives = 69/131 (52%), Gaps = 2/131 (1%)
Frame = +1
Query: 55 DDVAALVVDNGSGMCKXGFAGDDXPRAVXPSIXGRPRHXGVMVGMGHKDSYVGDEAXXKR 234
+++ +LV+D GS + G+AG++ P + PS + GV + ++ YV DE
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPS------YYGVRSDVTGRNKYVVDELQIHA 61
Query: 235 GI--LTLKYPIEHGXITNWDDMEKIWHHTFYNELRVAPXEHPVLLTEXPLNPKANREKMT 408
I + +K +G I +W+ W +L+V P E+ +++TE NP++ R+++
Sbjct: 62 PIPGMEVKNGKSNGIIQDWESTLYTWERGLKEKLQVNPTEYAMMITEPSWNPQSVRQQIM 121
Query: 409 QIMFETLNSPA 441
+ FE L+ PA
Sbjct: 122 EAAFEQLHVPA 132
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 31.9 bits (69), Expect = 0.047
Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 4/65 (6%)
Frame = +1
Query: 256 PIEHGXITNWDDMEKIWHHTFYNELRVAPXE----HPVLLTEXPLNPKANREKMTQIMFE 423
PI+ G + +W+ ++ W H Y+ L P + +PV L +RE TQ FE
Sbjct: 113 PIQRGRVVDWEALKAFWKH-LYSLLLKDPNDTTFRYPVCLVIPTYWSLYDRELATQFFFE 171
Query: 424 TLNSP 438
P
Sbjct: 172 ECQVP 176
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 27.9 bits (59), Expect = 0.76
Identities = 28/122 (22%), Positives = 51/122 (41%), Gaps = 4/122 (3%)
Frame = +1
Query: 70 LVVDNGSGMCKXGFAGDDXPRAVXPSIXGRPRHXGVMVGMGHKDSYVGDEAXXKRGILTL 249
+V+DNG+ K GFAG P+ R + G++ ++G+E TL
Sbjct: 8 IVLDNGAYHIKAGFAGGKV--VEIPNCLTRSKD-------GNR-LFLGNELANCNDFTTL 57
Query: 250 KYPIEH--GXITNWDDMEKIWHHTFYNELRVAP--XEHPVLLTEXPLNPKANREKMTQIM 417
++ H G + +W +W N + P ++ +LLT+ + Q++
Sbjct: 58 QFRRAHEKGYLVHWSTETAVWDLVMRNVGVMEPSMADYSLLLTQPVFTMPSIEHNTIQLV 117
Query: 418 FE 423
FE
Sbjct: 118 FE 119
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 25.8 bits (54), Expect = 3.1
Identities = 14/48 (29%), Positives = 23/48 (47%)
Frame = +1
Query: 115 GDDXPRAVXPSIXGRPRHXGVMVGMGHKDSYVGDEAXXKRGILTLKYP 258
G+ PRA + P H G+++ M KD G+E +G + + P
Sbjct: 502 GNQNPRATFVPLLCLPEHGGMVISM--KDWIGGEEFMSPKGFKSPRTP 547
>SPBC1683.09c |frp1||ferric-chelate reductase
Frp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 564
Score = 25.4 bits (53), Expect = 4.1
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +1
Query: 175 VMVGMGHKDSYVGDEAXXKRGILTLKYPI 261
+M+G H +Y+G A KR +LT + I
Sbjct: 165 IMIGAIHGFAYIGLAAQGKRALLTARVTI 193
>SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1066
Score = 24.2 bits (50), Expect = 9.4
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -2
Query: 256 GTSE*GYLSXXGPRHPRRSLYGPYRP 179
G+S G+ S G +PR++L+ PY P
Sbjct: 268 GSSGSGF-SSGGSGNPRKNLFSPYLP 292
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,517,083
Number of Sequences: 5004
Number of extensions: 24386
Number of successful extensions: 60
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 166231220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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