Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31704
(449 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_56628| Best HMM Match : Actin (HMM E-Value=0) 265 1e-71
SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.) 260 3e-70
SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.) 258 2e-69
SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.) 258 2e-69
SB_56| Best HMM Match : Actin (HMM E-Value=0) 256 6e-69
SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.) 166 9e-42
SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.) 113 6e-26
SB_54| Best HMM Match : Actin (HMM E-Value=0) 65 2e-11
SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022) 55 3e-08
SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07) 55 3e-08
SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40) 53 1e-07
SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6) 52 3e-07
SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12) 50 9e-07
SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011) 42 2e-04
SB_13343| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.25
SB_54914| Best HMM Match : Patched (HMM E-Value=1.3e-09) 30 1.0
SB_38756| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.0
SB_43100| Best HMM Match : Metallophos (HMM E-Value=0.63) 27 5.4
SB_54780| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.5
SB_35780| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.5
SB_23441| Best HMM Match : IncA (HMM E-Value=2.5) 27 9.5
>SB_56628| Best HMM Match : Actin (HMM E-Value=0)
Length = 376
Score = 265 bits (649), Expect = 1e-71
Identities = 120/133 (90%), Positives = 121/133 (90%)
Frame = +1
Query: 46 MCDDDVAALVVDNGSGMCKXGFAGDDXPRAVXPSIXGRPRHXGVMVGMGHKDSYVGDEAX 225
MCDDDVAALVVDNGSGMCK GFAGDD PRAV PSI GRPRH GVMVGMG KDSYVGDEA
Sbjct: 1 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 226 XKRGILTLKYPIEHGXITNWDDMEKIWHHTFYNELRVAPXEHPVLLTEXPLNPKANREKM 405
KRGILTLKYPIEHG +TNWDDMEKIWHHTFYNELRVAP EHPVLLTE PLNPKANREKM
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 120
Query: 406 TQIMFETLNSPAM 444
TQIMFET NSPAM
Sbjct: 121 TQIMFETFNSPAM 133
>SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 349
Score = 260 bits (638), Expect = 3e-70
Identities = 117/133 (87%), Positives = 120/133 (90%)
Frame = +1
Query: 46 MCDDDVAALVVDNGSGMCKXGFAGDDXPRAVXPSIXGRPRHXGVMVGMGHKDSYVGDEAX 225
M DDD+AALV+DNGSGMCK GFAGDD PRAV PSI GRPRH GVMVGMG KDSYVGDEA
Sbjct: 1 MADDDIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 226 XKRGILTLKYPIEHGXITNWDDMEKIWHHTFYNELRVAPXEHPVLLTEXPLNPKANREKM 405
KRGILTLKYPIEHG +TNWDDMEKIWHHTFYNELRVAP EHPVLLTE PLNPKANREKM
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 120
Query: 406 TQIMFETLNSPAM 444
TQIMFET NSPAM
Sbjct: 121 TQIMFETFNSPAM 133
>SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 376
Score = 258 bits (631), Expect = 2e-69
Identities = 117/133 (87%), Positives = 120/133 (90%)
Frame = +1
Query: 46 MCDDDVAALVVDNGSGMCKXGFAGDDXPRAVXPSIXGRPRHXGVMVGMGHKDSYVGDEAX 225
M DD++AALVVDNGSGMCK GFAGDD PRAV PSI GRPRH GVMVGMG KDSYVGDEA
Sbjct: 1 MEDDEIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 226 XKRGILTLKYPIEHGXITNWDDMEKIWHHTFYNELRVAPXEHPVLLTEXPLNPKANREKM 405
KRGILTLKYPIEHG +TNWDDMEKIWHHTFYNELRVAP EHPVLLTE PLNPKANREKM
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 120
Query: 406 TQIMFETLNSPAM 444
TQIMFET NSPAM
Sbjct: 121 TQIMFETFNSPAM 133
>SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 258 bits (631), Expect = 2e-69
Identities = 117/131 (89%), Positives = 119/131 (90%)
Frame = +1
Query: 52 DDDVAALVVDNGSGMCKXGFAGDDXPRAVXPSIXGRPRHXGVMVGMGHKDSYVGDEAXXK 231
+DDVAALVVDNGSGMCK GFAGDD PRAV PSI GRPRH GVMVGMG KDSYVGDEA K
Sbjct: 2 EDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 61
Query: 232 RGILTLKYPIEHGXITNWDDMEKIWHHTFYNELRVAPXEHPVLLTEXPLNPKANREKMTQ 411
RGILTLKYPIEHG +TNWDDMEKIWHHTFYNELRVAP EHPVLLTE PLNPKANREKMTQ
Sbjct: 62 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 121
Query: 412 IMFETLNSPAM 444
IMFET NSPAM
Sbjct: 122 IMFETFNSPAM 132
>SB_56| Best HMM Match : Actin (HMM E-Value=0)
Length = 375
Score = 256 bits (627), Expect = 6e-69
Identities = 116/131 (88%), Positives = 119/131 (90%)
Frame = +1
Query: 52 DDDVAALVVDNGSGMCKXGFAGDDXPRAVXPSIXGRPRHXGVMVGMGHKDSYVGDEAXXK 231
+D+VAALVVDNGSGMCK GFAGDD PRAV PSI GRPRH GVMVGMG KDSYVGDEA K
Sbjct: 2 EDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 61
Query: 232 RGILTLKYPIEHGXITNWDDMEKIWHHTFYNELRVAPXEHPVLLTEXPLNPKANREKMTQ 411
RGILTLKYPIEHG +TNWDDMEKIWHHTFYNELRVAP EHPVLLTE PLNPKANREKMTQ
Sbjct: 62 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 121
Query: 412 IMFETLNSPAM 444
IMFET NSPAM
Sbjct: 122 IMFETFNSPAM 132
>SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 338
Score = 166 bits (403), Expect = 9e-42
Identities = 75/89 (84%), Positives = 77/89 (86%)
Frame = +1
Query: 52 DDDVAALVVDNGSGMCKXGFAGDDXPRAVXPSIXGRPRHXGVMVGMGHKDSYVGDEAXXK 231
DDDVAALV+DNGSGMCK GFAGDD PRAV PSI GRPRH GVMVGMG KDSYVGDEA K
Sbjct: 2 DDDVAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 61
Query: 232 RGILTLKYPIEHGXITNWDDMEKIWHHTF 318
RGILTLKYPIEHG +TNWDDMEKI TF
Sbjct: 62 RGILTLKYPIEHGIVTNWDDMEKIMFETF 90
Score = 28.3 bits (60), Expect = 3.1
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = +1
Query: 391 NREKMTQIMFETLNSPAM 444
N + M +IMFET NSPAM
Sbjct: 78 NWDDMEKIMFETFNSPAM 95
>SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 411
Score = 113 bits (272), Expect = 6e-26
Identities = 54/123 (43%), Positives = 78/123 (63%), Gaps = 3/123 (2%)
Frame = +1
Query: 64 AALVVDNGSGMCKXGFAGDDXPRAVXPSIXGRP--RHXGVMVGMGHKDSYVGDEAXXKRG 237
+ +V DNG+G K G+AG + P + PS+ GRP R + + KD VGDEA R
Sbjct: 7 SVIVCDNGTGFVKCGYAGSNFPAHIFPSMVGRPIIRSSQKVGDIEVKDLMVGDEASQLRY 66
Query: 238 ILTLKYPIEHGXITNWDDMEKIWHHTF-YNELRVAPXEHPVLLTEXPLNPKANREKMTQI 414
+L + YP+++G + NWDDM+ +W +TF +++ + P VLLTE PLNP NREKM ++
Sbjct: 67 MLEVNYPMDNGIVRNWDDMKHVWDYTFGESKMNIDPRNTKVLLTEPPLNPMKNREKMIEV 126
Query: 415 MFE 423
MFE
Sbjct: 127 MFE 129
>SB_54| Best HMM Match : Actin (HMM E-Value=0)
Length = 2486
Score = 65.3 bits (152), Expect = 2e-11
Identities = 29/49 (59%), Positives = 36/49 (73%)
Frame = +1
Query: 298 KIWHHTFYNELRVAPXEHPVLLTEXPLNPKANREKMTQIMFETLNSPAM 444
K+W H F ++LRV + PVLLTE PLNPK NRE+M Q+MFE+ N P M
Sbjct: 2130 KMWEHAF-DQLRVRGEDFPVLLTEAPLNPKMNRERMVQLMFESFNVPCM 2177
Score = 52.4 bits (120), Expect = 2e-07
Identities = 25/52 (48%), Positives = 32/52 (61%)
Frame = +1
Query: 13 ASPTQTHTKFKMCDDDVAALVVDNGSGMCKXGFAGDDXPRAVXPSIXGRPRH 168
AS T+ F+ V +V+DNGSG CK G + D+ PR V P+I GRPRH
Sbjct: 2080 ASVTKQQAAFEQNGGTV--VVIDNGSGFCKAGLSTDESPRVVFPAIVGRPRH 2129
>SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022)
Length = 921
Score = 54.8 bits (126), Expect = 3e-08
Identities = 30/84 (35%), Positives = 48/84 (57%), Gaps = 3/84 (3%)
Frame = +1
Query: 7 IPASPTQTHTKFKMCDDDVAALVVDNGSGMCKXGFAGDDXPRAVXPSIXGRPRHXGVMVG 186
IP + + ++ FK+ A+V+DNG G+ K GFAGD PR + P++ G P+ +++G
Sbjct: 683 IPRTKKRRYS-FKLDSHYNRAIVLDNGCGISKIGFAGDRVPRIIQPAVVGNPQRFSMLIG 741
Query: 187 --MGHKD-SYVGDEAXXKRGILTL 249
+ KD GD A K G++ L
Sbjct: 742 DNVNVKDYKKYGDAAVAKSGVMHL 765
>SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07)
Length = 240
Score = 54.8 bits (126), Expect = 3e-08
Identities = 24/62 (38%), Positives = 37/62 (59%)
Frame = +1
Query: 256 PIEHGXITNWDDMEKIWHHTFYNELRVAPXEHPVLLTEXPLNPKANREKMTQIMFETLNS 435
PI+ G I +WD EKI + + ++ HP+L++E N + REK+T++MFE N
Sbjct: 3 PIKDGMIEDWDLFEKILDYIYSKNIKSDSALHPLLMSEAAWNTRIKREKLTELMFEKYNV 62
Query: 436 PA 441
PA
Sbjct: 63 PA 64
>SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40)
Length = 367
Score = 53.2 bits (122), Expect = 1e-07
Identities = 22/37 (59%), Positives = 27/37 (72%)
Frame = +1
Query: 334 VAPXEHPVLLTEXPLNPKANREKMTQIMFETLNSPAM 444
V +HPVLLTE PLNP+ NREK ++ FET N PA+
Sbjct: 122 VRQVQHPVLLTEAPLNPRRNREKAAEVFFETFNVPAL 158
>SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6)
Length = 372
Score = 51.6 bits (118), Expect = 3e-07
Identities = 23/60 (38%), Positives = 32/60 (53%)
Frame = +1
Query: 184 GMGHKDSYVGDEAXXKRGILTLKYPIEHGXITNWDDMEKIWHHTFYNELRVAPXEHPVLL 363
G+ D ++GDEA K T K+PI H + +WD ME+ W + LR P +H LL
Sbjct: 278 GVEDLDFFIGDEAIDKPSYAT-KWPIRHAIVEDWDLMERFWEQCIFKYLRAEPEDHYFLL 336
>SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12)
Length = 1392
Score = 50.0 bits (114), Expect = 9e-07
Identities = 22/33 (66%), Positives = 24/33 (72%)
Frame = +1
Query: 70 LVVDNGSGMCKXGFAGDDXPRAVXPSIXGRPRH 168
LV+D GS M K GFAGDD P+ V P I GRPRH
Sbjct: 1359 LVIDVGSHMWKVGFAGDDAPKGVFPPIVGRPRH 1391
>SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011)
Length = 580
Score = 41.9 bits (94), Expect = 2e-04
Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 2/91 (2%)
Frame = +1
Query: 61 VAALVVDNGSGMCKXGFAGDDXPRAVXPSIXGRPRHXGVMVGMGHKDSYVGDEAXXKRGI 240
+A LV+D G+ K GFA + PR++ +I + ++GD+ +
Sbjct: 233 MATLVLDCGACSQKIGFASNQAPRSIPNAIFKAKSE--------RRKLFIGDQIEECKDY 284
Query: 241 LTLKY--PIEHGXITNWDDMEKIWHHTFYNE 327
L Y P + G + NWD ++IW +TF E
Sbjct: 285 SALFYVLPFQKGFLVNWDVEKQIWDYTFGKE 315
>SB_13343| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 198
Score = 31.9 bits (69), Expect = 0.25
Identities = 13/24 (54%), Positives = 18/24 (75%)
Frame = -3
Query: 123 VVXGETXLAHAGAIVDYKRSNIVV 52
+V GET LAH GAI+D + +I+V
Sbjct: 16 IVSGETGLAHTGAIIDNQSCDIIV 39
>SB_54914| Best HMM Match : Patched (HMM E-Value=1.3e-09)
Length = 645
Score = 29.9 bits (64), Expect = 1.0
Identities = 19/60 (31%), Positives = 30/60 (50%)
Frame = -3
Query: 408 GHLLPVGLGVEGGFGEQHGVLXGGDTQLIVEGVVPDLLHVIPVGDXTVLDGVLQSEDTSL 229
G +L V LG+ GFG V G + + GV+P L+ I + D ++ + +D SL
Sbjct: 157 GGILAVALGILAGFGLAMAV---GTPFISLAGVLPFLILGIGIDDMFIIINEMDRQDNSL 213
>SB_38756| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 220
Score = 29.9 bits (64), Expect = 1.0
Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Frame = +1
Query: 247 LKYPIEHGXITNWDDMEKIWHHTFYNELRVAPX--EHPVLLTEXPLNPKANRE 399
L+ P + +T+++ E++ H F + P HPV++TE NP R+
Sbjct: 131 LRTPFDRDVVTHYECQEQVLDHAFSHLGINTPGGVNHPVIMTEPVCNPNYCRQ 183
>SB_43100| Best HMM Match : Metallophos (HMM E-Value=0.63)
Length = 234
Score = 27.5 bits (58), Expect = 5.4
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -1
Query: 233 LLXWASSPT*ESLWPIPTITPWWRGRP 153
+L W+ P + L PTITP W+G+P
Sbjct: 209 ILHWSEQP--KVLATEPTITPEWQGQP 233
>SB_54780| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 275
Score = 26.6 bits (56), Expect = 9.5
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +3
Query: 39 VQDVRRRCCCACSRQW 86
V+D+ CCAC R+W
Sbjct: 108 VKDILSSVCCACPRRW 123
>SB_35780| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 749
Score = 26.6 bits (56), Expect = 9.5
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = -1
Query: 173 PWWRGRPXMDGKTARGXSSPAKPXLHMPEP 84
P W + G T R PAKP L++P P
Sbjct: 530 PKWLQQVKDGGNTNRRTRIPAKPSLNLPSP 559
>SB_23441| Best HMM Match : IncA (HMM E-Value=2.5)
Length = 927
Score = 26.6 bits (56), Expect = 9.5
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = -1
Query: 260 MGYFRVRIPLLXWASSPT*ESLWPIPTITP 171
MGY ++ P W + ++ P PT+TP
Sbjct: 363 MGYVVIKAPYPVWTLLSSTPTITPTPTVTP 392
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,280,575
Number of Sequences: 59808
Number of extensions: 209698
Number of successful extensions: 507
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 473
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 504
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 896151577
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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