Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31703
         (400 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19076| Best HMM Match : HECT (HMM E-Value=0)                        29   1.8  
SB_37295| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.8  
SB_30752| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.4  
SB_17317| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.4  
SB_33716| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.2  
SB_21268| Best HMM Match : DnaJ_CXXCXGXG (HMM E-Value=3.7)             28   3.2  
SB_6245| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   3.2  
SB_56086| Best HMM Match : 7tm_1 (HMM E-Value=1.1e-06)                 27   4.3  
SB_9042| Best HMM Match : TNFR_c6 (HMM E-Value=7.8)                    27   4.3  
SB_54925| Best HMM Match : MFS_1 (HMM E-Value=4.7e-27)                 27   5.6  
SB_19342| Best HMM Match : Keratin_B2 (HMM E-Value=0.41)               27   5.6  
SB_9354| Best HMM Match : Endonuclease_7 (HMM E-Value=0.18)            27   7.4  
SB_32707| Best HMM Match : Peptidase_A17 (HMM E-Value=4.8e-22)         27   7.4  
SB_56071| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.8  
SB_26236| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.8  
SB_6396| Best HMM Match : No HMM Matches (HMM E-Value=.)               26   9.8  

>SB_19076| Best HMM Match : HECT (HMM E-Value=0)
          Length = 2018

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 16/40 (40%), Positives = 23/40 (57%)
 Frame = -1

Query: 217 VAMPSRPFSILSSSIPWSAKLEISFTCPALSLPKLSSAES 98
           V  PS+PFS+++S+I  +   E  F+   L L   SSA S
Sbjct: 841 VCRPSQPFSLITSNIEATQASEELFSVEPLPLKSPSSATS 880


>SB_37295| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 620

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = -1

Query: 268 IFEVRAPPMAVPIPPNEVAMPSRPFS 191
           I +V  PP + P PPN  A PS  FS
Sbjct: 268 IQDVTQPPPSTPAPPNTPAPPSGKFS 293


>SB_30752| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 584

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 19/76 (25%), Positives = 30/76 (39%), Gaps = 3/76 (3%)
 Frame = -2

Query: 228 RPMKWQCLQGPFRFYLRLYHGLLNWKYPLRARHCLCQNCRARS---HQSYRIPESWCPNP 58
           R   ++CL G  ++Y +  HG  +   P   R   C+ C   S   H+  R     C   
Sbjct: 491 RTTDYKCLHGRVKYYCKDCHG--SQICPHNRRKTRCRECNGGSICEHRRARYVCKDCKGK 548

Query: 57  GVMVSKSRNPWCPKXG 10
           G+     + P+C   G
Sbjct: 549 GMCGHGKQRPFCKLCG 564


>SB_17317| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 591

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
 Frame = -2

Query: 195 FRFYLRLYHGLLNWKYPLRARHCLCQNCR--ARSHQSYRIPESWC-PNPGV 52
           F  Y+RL   L N+KYP+ ++    + CR     H   +    W  PN G+
Sbjct: 451 FSEYIRLNFELQNYKYPIGSKMYPARTCRDLHMCHPKLKSGNYWIDPNEGI 501


>SB_33716| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 922

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = -2

Query: 246 QWQCRYRPMKWQCLQGPFRFYLRLYHGLLNWKYPLRARHC 127
           +W+ RY P  W  ++ PF  + R Y        P R R C
Sbjct: 773 RWESRYTP--WCSVRTPFMMWRRRYEQSCTLASPSRKRFC 810


>SB_21268| Best HMM Match : DnaJ_CXXCXGXG (HMM E-Value=3.7)
          Length = 185

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 18/72 (25%), Positives = 29/72 (40%), Gaps = 3/72 (4%)
 Frame = -2

Query: 228 RPMKWQCLQGPFRFYLRLYHGLLNWKYPLRARHCLCQNCRARS---HQSYRIPESWCPNP 58
           R   ++CL G  ++Y +  HG  +   P   R   C+ C   S   H+  R     C   
Sbjct: 16  RTTDYKCLHGRVKYYCKDCHG--SQICPHNRRKTRCRECNGGSICEHRRARYVCKDCKGK 73

Query: 57  GVMVSKSRNPWC 22
           G+     + P+C
Sbjct: 74  GMCEHGKQRPFC 85


>SB_6245| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1000

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 27/84 (32%), Positives = 37/84 (44%), Gaps = 2/84 (2%)
 Frame = -1

Query: 253 APPMAVPIPPNEVAMPSRPFS--ILSSSIPWSAKLEISFTCPALSLPKLSSAESPKLPNP 80
           APP   P+PP    +P  P S  +  +  P+SA   +    PA ++    SAE P  P P
Sbjct: 763 APPQFAPVPPPCAPIPPMPCSAPLPPAPAPFSAAPHLP---PAPNI----SAEPP--PPP 813

Query: 79  GVVVSKSRSHGVQIPESMVSQXRS 8
            V    SRS+      S+  Q  S
Sbjct: 814 PVARKPSRSNSTSSQRSLELQSPS 837


>SB_56086| Best HMM Match : 7tm_1 (HMM E-Value=1.1e-06)
          Length = 520

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 9/19 (47%), Positives = 12/19 (63%), Gaps = 2/19 (10%)
 Frame = +2

Query: 212 CHFIGRYRHCHW--WCPHL 262
           C+F G Y+H HW   CP +
Sbjct: 88  CYFFGYYKHPHWQSMCPEI 106


>SB_9042| Best HMM Match : TNFR_c6 (HMM E-Value=7.8)
          Length = 125

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 18/72 (25%), Positives = 29/72 (40%), Gaps = 3/72 (4%)
 Frame = -2

Query: 228 RPMKWQCLQGPFRFYLRLYHGLLNWKYPLRARHCLCQNCRARS---HQSYRIPESWCPNP 58
           R   ++CL G  ++Y +  HG  +   P   R   C+ C   S   H+  R     C   
Sbjct: 22  RTTDYKCLHGRVKYYCKDCHG--SQICPHNRRKTRCRECNGGSICEHRRARYVCKDCKGK 79

Query: 57  GVMVSKSRNPWC 22
           G+     + P+C
Sbjct: 80  GMCGHGKQRPFC 91


>SB_54925| Best HMM Match : MFS_1 (HMM E-Value=4.7e-27)
          Length = 1373

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 24/103 (23%), Positives = 40/103 (38%), Gaps = 2/103 (1%)
 Frame = -1

Query: 319  VKQIVLTCXDQCLRPFAIFEVRAPPMAVPIPPNEVAMPSRPFSILSSSIPWSAKLEISFT 140
            VKQ+ +        P      +  P     P +  A+P   F+++    P     ++ F 
Sbjct: 1181 VKQVQVVATQAASSPVQPVTPQVRPATPTTPVSSSAVPGSTFTVIDPQAPG----QMGFF 1236

Query: 139  CPALSLPKLSSAESP--KLPNPGVVVSKSRSHGVQIPESMVSQ 17
             P LS   L     P  K   P  +   S++   Q+P S++SQ
Sbjct: 1237 RPHLSGQALQQIIGPDGKPILPSGIPFPSQAFYQQVPASLISQ 1279


>SB_19342| Best HMM Match : Keratin_B2 (HMM E-Value=0.41)
          Length = 1093

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 15/64 (23%), Positives = 25/64 (39%)
 Frame = -1

Query: 250 PPMAVPIPPNEVAMPSRPFSILSSSIPWSAKLEISFTCPALSLPKLSSAESPKLPNPGVV 71
           P +  P  P     PS P +  S +IP +   +        S+ +     +PK   P  +
Sbjct: 239 PALVTPNIPRSSDTPSSPPATSSITIPKATDTQSRPATLRASISRTKDTHTPKTSTPTAI 298

Query: 70  VSKS 59
           + KS
Sbjct: 299 IPKS 302


>SB_9354| Best HMM Match : Endonuclease_7 (HMM E-Value=0.18)
          Length = 386

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = +2

Query: 209 HCHFIGRYR-HCHWWCPHLKYRKWPQTL-IXACQHNL 313
           HCH  G+YR   H  C +LK R  P+ + I    HNL
Sbjct: 213 HCHITGKYRGSAHQEC-NLKLRIDPEEIKIFVIFHNL 248


>SB_32707| Best HMM Match : Peptidase_A17 (HMM E-Value=4.8e-22)
          Length = 2269

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 15/54 (27%), Positives = 20/54 (37%), Gaps = 2/54 (3%)
 Frame = -2

Query: 252 HHQWQCRYRPMKWQCLQGPFRFYLRLYHGLL--NWKYPLRARHCLCQNCRARSH 97
           HH     Y P    C  G        Y   L  N ++ +  R+ LC+ C  R H
Sbjct: 330 HHAMNVEYEPCPLGCYSGHLLSACPAYQRNLSVNQRWDIVRRNNLCRKCLRRHH 383


>SB_56071| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 856

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = +1

Query: 223 WAVSALPLVVPSPQISQM 276
           W + AL L+VP+P+++ M
Sbjct: 396 WTIQALRLLVPAPEVNNM 413


>SB_26236| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 736

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 10/26 (38%), Positives = 19/26 (73%)
 Frame = +1

Query: 178 TKIKSKRALKALPLHWAVSALPLVVP 255
           TK++S+ ++++LP H A S   L++P
Sbjct: 573 TKVQSEASMRSLPTHIAESLTALMLP 598


>SB_6396| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 382

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = +2

Query: 209 HCHFIGRYR-HCHWWCPHLKYRKWPQTL-IXACQHNL 313
           HCH  G+YR   H  C +LK R  P+ + I    HNL
Sbjct: 141 HCHITGKYRGSAHQEC-NLKLRINPEKIKIPIIFHNL 176


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,049,996
Number of Sequences: 59808
Number of extensions: 268560
Number of successful extensions: 854
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 781
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 851
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 703143849
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)