Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31703
(400 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g58250.1 68418.m07293 expressed protein 33 0.070
At4g24930.1 68417.m03570 thylakoid lumenal 17.9 kDa protein, chl... 31 0.28
At3g27490.1 68416.m03437 DC1 domain-containing protein contains ... 30 0.65
At5g28440.1 68418.m03454 expressed protein 29 1.1
At5g56870.1 68418.m07097 beta-galactosidase, putative / lactase,... 28 2.0
At2g04780.2 68415.m00489 fasciclin-like arabinogalactan-protein ... 28 2.0
At2g04780.1 68415.m00488 fasciclin-like arabinogalactan-protein ... 28 2.0
At1g77130.1 68414.m08985 glycogenin glucosyltransferase (glycoge... 28 2.0
At3g27473.1 68416.m03434 DC1 domain-containing protein contains ... 28 2.6
At5g13560.1 68418.m01566 expressed protein weak similarity to SP... 27 3.5
At1g44835.1 68414.m05136 YbaK/prolyl-tRNA synthetase family prot... 27 3.5
At3g28700.1 68416.m03581 expressed protein contains Pfam PF02636... 27 4.6
At3g22070.1 68416.m02785 proline-rich family protein contains pr... 27 4.6
At2g28470.1 68415.m03460 beta-galactosidase, putative / lactase,... 27 4.6
At5g09930.1 68418.m01148 ABC transporter family protein 27 6.1
At4g03550.1 68417.m00486 glycosyl transferase family 48 protein ... 27 6.1
At1g73760.1 68414.m08540 zinc finger (C3HC4-type RING finger) fa... 27 6.1
At5g03360.1 68418.m00289 DC1 domain-containing protein contains ... 26 8.0
At4g32980.1 68417.m04691 homeobox protein (ATH1) identical to SW... 26 8.0
At3g01560.1 68416.m00086 proline-rich family protein contains pr... 26 8.0
At2g06200.1 68415.m00682 expressed protein 26 8.0
At1g79480.1 68414.m09263 hypothetical protein low similarity to ... 26 8.0
>At5g58250.1 68418.m07293 expressed protein
Length = 211
Score = 33.1 bits (72), Expect = 0.070
Identities = 20/66 (30%), Positives = 33/66 (50%)
Frame = -1
Query: 244 MAVPIPPNEVAMPSRPFSILSSSIPWSAKLEISFTCPALSLPKLSSAESPKLPNPGVVVS 65
+ V +PP A ++PF ++SSS P K ++ + P+LSLP + S K +
Sbjct: 8 LTVAVPPTAAACRTKPF-LISSSFPKQTK-KLHLSSPSLSLPSSHFSSSFKTAATSIEQQ 65
Query: 64 KSRSHG 47
S + G
Sbjct: 66 SSVNKG 71
>At4g24930.1 68417.m03570 thylakoid lumenal 17.9 kDa protein,
chloroplast SP:Q9SW33;GI:17369630;PMID:11719511; similar
to expressed protein gi:12321169 {Oryza sativa}
Length = 225
Score = 31.1 bits (67), Expect = 0.28
Identities = 15/50 (30%), Positives = 27/50 (54%)
Frame = -1
Query: 235 PIPPNEVAMPSRPFSILSSSIPWSAKLEISFTCPALSLPKLSSAESPKLP 86
P E++ S P S+L I ++ + ++ PAL++P LSS++ P
Sbjct: 27 PKQEQELSSTSPPISLLPKLISFALAISLTSFSPALAIPSLSSSQPLTTP 76
>At3g27490.1 68416.m03437 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 682
Score = 29.9 bits (64), Expect = 0.65
Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
Frame = -2
Query: 240 QCRYRPMKWQCLQGPFRFYLRLYHGLLNWKYPLRARHCLCQNCRARSHQSY-RIPESWCP 64
QC + +C Q P ++ + +++KYPL C C SY P S CP
Sbjct: 276 QCDFMIFHQKCAQLPRVIHVNHHDHRISYKYPLGPGEWRCGVCWEEIDWSYGAYPCSLCP 335
Query: 63 N 61
N
Sbjct: 336 N 336
>At5g28440.1 68418.m03454 expressed protein
Length = 276
Score = 29.1 bits (62), Expect = 1.1
Identities = 17/47 (36%), Positives = 22/47 (46%)
Frame = -1
Query: 229 PPNEVAMPSRPFSILSSSIPWSAKLEISFTCPALSLPKLSSAESPKL 89
P + VA SR +LS +S +E F C S SSAE +L
Sbjct: 227 PSSSVASSSRTVKLLSRVADYSCGVETFFACSRGSRGSFSSAEPTRL 273
>At5g56870.1 68418.m07097 beta-galactosidase, putative / lactase,
putative similar to beta-galactosidase precursor
GI:3869280 from [Carica papaya]
Length = 724
Score = 28.3 bits (60), Expect = 2.0
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = -2
Query: 168 GLLNWKYPLRARHCLCQNCRARSHQSYRIPESWCPNPGVMV 46
G N+ A+ CL NC S + Y +P SW + ++V
Sbjct: 667 GRCNYAGTFDAKKCL-SNCGEASQRWYHVPRSWLKSQNLIV 706
>At2g04780.2 68415.m00489 fasciclin-like arabinogalactan-protein
(FLA7) identical to gi_13377782_gb_AAK20860
Length = 254
Score = 28.3 bits (60), Expect = 2.0
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = -1
Query: 292 DQCLRPFAIFEVRAPPMAVPIPPNEVAMPSRPFSILSS 179
++ L P AIF PPM P P V+ PS S+ S
Sbjct: 183 NRVLLPEAIFGTDVPPMPAPAPAPIVSAPSDSPSVADS 220
>At2g04780.1 68415.m00488 fasciclin-like arabinogalactan-protein
(FLA7) identical to gi_13377782_gb_AAK20860
Length = 254
Score = 28.3 bits (60), Expect = 2.0
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = -1
Query: 292 DQCLRPFAIFEVRAPPMAVPIPPNEVAMPSRPFSILSS 179
++ L P AIF PPM P P V+ PS S+ S
Sbjct: 183 NRVLLPEAIFGTDVPPMPAPAPAPIVSAPSDSPSVADS 220
>At1g77130.1 68414.m08985 glycogenin glucosyltransferase
(glycogenin)-related contains similarity to glycogenin-1
from Mus musculus [SP|Q9R062], Rattus norvegicus
[SP|O08730], Homo sapiens [SP|P46976]
Length = 618
Score = 28.3 bits (60), Expect = 2.0
Identities = 10/37 (27%), Positives = 19/37 (51%)
Frame = -1
Query: 274 FAIFEVRAPPMAVPIPPNEVAMPSRPFSILSSSIPWS 164
F I+ R PP+ +P P + + P + ++ I W+
Sbjct: 51 FTIYRFRYPPLQIPEIPTSFGLTTDPRYVATAEINWN 87
>At3g27473.1 68416.m03434 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 662
Score = 27.9 bits (59), Expect = 2.6
Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
Frame = -2
Query: 240 QCRYRPMKWQCLQGPFRFYLRLYHGLLNWKYPLRARHCLCQNCRARSHQSYRIPE-SWCP 64
QC +R +C + P ++ + +++KYPL C C SY S CP
Sbjct: 269 QCDFRMFHQKCARLPRVIHVNHHDHRVSYKYPLGPGEWRCGVCWEEIDWSYGAYSCSLCP 328
Query: 63 N 61
N
Sbjct: 329 N 329
>At5g13560.1 68418.m01566 expressed protein weak similarity to
SP|O42184 Restin (Cytoplasmic linker protein-170)
(CLIP-170) {Gallus gallus}
Length = 679
Score = 27.5 bits (58), Expect = 3.5
Identities = 18/69 (26%), Positives = 30/69 (43%)
Frame = -1
Query: 238 VPIPPNEVAMPSRPFSILSSSIPWSAKLEISFTCPALSLPKLSSAESPKLPNPGVVVSKS 59
+P P + V P + S P S+ + S P+LS+ SP+ PNP S+
Sbjct: 583 IPSPRSSVTSPKSSATSPKSPKPSSSSMNASTESTQTQKPELSN--SPQAPNPAAGSSQE 640
Query: 58 RSHGVQIPE 32
+ ++ E
Sbjct: 641 FNPEAELAE 649
>At1g44835.1 68414.m05136 YbaK/prolyl-tRNA synthetase family protein
contains Pfam PF04073: YbaK / prolyl-tRNA synthetases
associated domain; similar to 25.7 kDa protein
(GI:7271117) [Cicer arietinum]
Length = 307
Score = 27.5 bits (58), Expect = 3.5
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -1
Query: 256 RAPPMAVPIPPNEVAMPSRPFSILSSSIP 170
+AP +AV +P N V +P P S+ IP
Sbjct: 174 QAPDLAVCVPSNSVIVPEIPNQTSSTQIP 202
>At3g28700.1 68416.m03581 expressed protein contains Pfam PF02636:
Uncharacterized ACR, COG1565
Length = 471
Score = 27.1 bits (57), Expect = 4.6
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = -1
Query: 190 ILSSSIPWSAKLEISFTCPALSLPKLSSAESPKLPNPGVVVSKSRS 53
+ S P +K IS S P+ S+ESP + +PG +S RS
Sbjct: 15 LFSGVPPLFSKSTISPFSSLSSSPEPPSSESPAVEHPGTTISIDRS 60
>At3g22070.1 68416.m02785 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 178
Score = 27.1 bits (57), Expect = 4.6
Identities = 22/76 (28%), Positives = 30/76 (39%)
Frame = -1
Query: 277 PFAIFEVRAPPMAVPIPPNEVAMPSRPFSILSSSIPWSAKLEISFTCPALSLPKLSSAES 98
P I PP + P PP E + P P + +++ P +I P P SA
Sbjct: 102 PAPIVNPNPPPPSTPNPPPEFSPP--PPDLDTTTAPPPPSTDIPIPPPP---PAPVSASP 156
Query: 97 PKLPNPGVVVSKSRSH 50
P P VV S + H
Sbjct: 157 PLTPPSSVVTSPAPVH 172
>At2g28470.1 68415.m03460 beta-galactosidase, putative / lactase,
putative similar to Beta-galactosidase precursor
SP:P48980 from [Lycopersicon esculentum]
Length = 852
Score = 27.1 bits (57), Expect = 4.6
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = -2
Query: 141 RARHCLCQNCRARSHQSYRIPESWC-PNPGVMV 46
RA CL +NC S Y +P SW P+ ++V
Sbjct: 687 RANKCL-KNCGKPSQTLYHVPRSWLKPSGNILV 718
>At5g09930.1 68418.m01148 ABC transporter family protein
Length = 678
Score = 26.6 bits (56), Expect = 6.1
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = -1
Query: 148 SFTCPALSLPKLSSAESPKLPNPGVVVSKSRSHGVQIPESMVSQXR 11
+ TCP L KLSS +P+ P + S + ES++S R
Sbjct: 21 TITCPTLFTFKLSSVSNPRRVFPNIRAHVSAASSNSELESLLSTDR 66
>At4g03550.1 68417.m00486 glycosyl transferase family 48 protein
contains Pfam profile: PF02364 1,3-beta-glucan synthase
Length = 1780
Score = 26.6 bits (56), Expect = 6.1
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +1
Query: 52 DSGIWTPRLRDSVALVTPRSTVLAKTMPG 138
DS +WT +LRD + R LA+T+ G
Sbjct: 965 DSELWTTKLRDLRLWASYRGQTLARTVRG 993
>At1g73760.1 68414.m08540 zinc finger (C3HC4-type RING finger)
family protein similar to Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 367
Score = 26.6 bits (56), Expect = 6.1
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = -1
Query: 127 SLPKLSSAESPKLPNPGVVVSKSRSHGVQIPES 29
+LP +S+A+ P +P P V + S +PE+
Sbjct: 29 NLPPISTADEPLIPKPSRVSKSAMSSFFLLPET 61
>At5g03360.1 68418.m00289 DC1 domain-containing protein contains Pfam
profile PF03107: DC1 domain
Length = 1610
Score = 26.2 bits (55), Expect = 8.0
Identities = 15/48 (31%), Positives = 19/48 (39%)
Frame = -2
Query: 231 YRPMKWQCLQGPFRFYLRLYHGLLNWKYPLRARHCLCQNCRARSHQSY 88
Y PMKW CLQ + LL H C+ C +H+ Y
Sbjct: 1198 YIPMKWDCLQ--------VNWNLLKLPGENDFTHFRCRGCNGENHKGY 1237
>At4g32980.1 68417.m04691 homeobox protein (ATH1) identical to
SWISS-PROT:P48731 homeobox protein ATH1. [Arabidopsis
thaliana]
Length = 473
Score = 26.2 bits (55), Expect = 8.0
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = -2
Query: 135 RHCLCQNCRARSHQSYRIPESWCPNPGVMVSKS 37
+HCL Q + ++HQ +R P+ P V V ++
Sbjct: 358 QHCLLQQLKRKNHQIWR-PQRGLPEKSVSVLRN 389
>At3g01560.1 68416.m00086 proline-rich family protein contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 511
Score = 26.2 bits (55), Expect = 8.0
Identities = 17/58 (29%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
Frame = -1
Query: 250 PPMAVPIPPNEVAMPSR-PFSILSSSIPWSAKLEISFTCPALSLPKLSSAESPKLPNP 80
P + P PP+ A PS+ P S L +P + CP S P+ + P P
Sbjct: 249 PLTSFPQPPSSTAAPSQPPSSQLPPQLPTQFSSQQEPYCPPPSHPQPPPSNPPPYQAP 306
>At2g06200.1 68415.m00682 expressed protein
Length = 244
Score = 26.2 bits (55), Expect = 8.0
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = -1
Query: 238 VPIPPNEVAMPSRPFSILSSSIPWSAKLEISFTCPALS 125
+P+PP+ + + RPF SSS S+ SF P LS
Sbjct: 29 MPVPPHLLFLIKRPFLFSSSS---SSSSSSSFFSPTLS 63
>At1g79480.1 68414.m09263 hypothetical protein low similarity to
beta-1,3-glucanase-like protein GI:9758115 from
[Arabidopsis thaliana]
Length = 356
Score = 26.2 bits (55), Expect = 8.0
Identities = 17/57 (29%), Positives = 27/57 (47%)
Frame = -1
Query: 250 PPMAVPIPPNEVAMPSRPFSILSSSIPWSAKLEISFTCPALSLPKLSSAESPKLPNP 80
PP+ VP PP + P+ P S + + + S P +++P + ES PNP
Sbjct: 124 PPVTVPNPPESSSNPNPPDSSSNPNSNPNPPESSSNPNPPVTVP--NPPESSSNPNP 178
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,386,131
Number of Sequences: 28952
Number of extensions: 176474
Number of successful extensions: 681
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 648
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 679
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 575830496
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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