Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31701
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC926.03 |rlc1||myosin II regulatory light chain |Schizosaccha...    74   1e-14
SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|ch...    68   1e-12
SPAC29A4.05 |cam2||myosin I light chain Cam2|Schizosaccharomyces...    44   1e-05
SPAP8A3.08 |cdc4||myosin II light chain|Schizosaccharomyces pomb...    41   1e-04
SPCC1682.04 |cdc31||centrin|Schizosaccharomyces pombe|chr 3|||Ma...    36   0.004
SPAC1687.14c |||EF hand family protein, unknown role|Schizosacch...    27   1.7  
SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c...    25   6.7  

>SPAC926.03 |rlc1||myosin II regulatory light chain
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 184

 Score = 73.7 bits (173), Expect = 1e-14
 Identities = 42/121 (34%), Positives = 62/121 (51%), Gaps = 2/121 (1%)
 Frame = +2

Query: 158 SRKAKRTGSNVFSMFSQKQVAEFKEAFQLMDHDKDGIIGKNDLRATFDSLGRLASEKELD 337
           ++ AKR  S  F+  +  Q+ E KEAF L+D D DG IG+ D++    SL + ASE  ++
Sbjct: 28  AQAAKRASSGAFAQLTSSQIQELKEAFALLDKDGDGNIGREDVKTMLTSLNQDASEDSIN 87

Query: 338 EMVGEASGPINXTQXLTLFANRMCGGSDEDDVGXNAFKT--XXEEGKIDXXXLXHALMTW 511
            M    + PIN    LT   + +C  S  +D+   AF T    + GKI    +  AL + 
Sbjct: 88  HMFESINPPINLAAFLTAMGSMLCRISPRNDL-LEAFSTFDDTQSGKIPISTMRDALSSM 146

Query: 512 G 514
           G
Sbjct: 147 G 147


>SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 150

 Score = 67.7 bits (158), Expect = 1e-12
 Identities = 40/110 (36%), Positives = 61/110 (55%), Gaps = 6/110 (5%)
 Frame = +2

Query: 203 SQKQVAEFKEAFQLMDHDKDGIIGKNDLRATFDSLGRLASEKELDEMVGE----ASGPIN 370
           + +Q+AEF+EAF L D D+DG I  N+L     SLG+  +  EL +M+ E     +G I+
Sbjct: 7   TDEQIAEFREAFSLFDRDQDGNITSNELGVVMRSLGQSPTAAELQDMINEVDADGNGTID 66

Query: 371 XTQXLTLFANRMCGGSDEDDVGXNAFKTXXEEGK--IDXXXLXHALMTWG 514
            T+ LT+ A +M    +E++V   AFK   ++G   I    L H L + G
Sbjct: 67  FTEFLTMMARKMKDTDNEEEV-REAFKVFDKDGNGYITVEELTHVLTSLG 115



 Score = 35.9 bits (79), Expect = 0.004
 Identities = 17/45 (37%), Positives = 27/45 (60%)
 Frame = +2

Query: 221 EFKEAFQLMDHDKDGIIGKNDLRATFDSLGRLASEKELDEMVGEA 355
           E +EAF++ D D +G I   +L     SLG   S++E+ +M+ EA
Sbjct: 86  EVREAFKVFDKDGNGYITVEELTHVLTSLGERLSQEEVADMIREA 130


>SPAC29A4.05 |cam2||myosin I light chain Cam2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 143

 Score = 44.4 bits (100), Expect = 1e-05
 Identities = 23/76 (30%), Positives = 42/76 (55%)
 Frame = +2

Query: 203 SQKQVAEFKEAFQLMDHDKDGIIGKNDLRATFDSLGRLASEKELDEMVGEASGPINXTQX 382
           S++Q  E KEAF L D DKDG+I  + + +   SLG   ++ EL ++  E    I+  + 
Sbjct: 4   SKEQTDEMKEAFVLYDIDKDGLIPTSHVGSVLRSLGINVTDAELAKLSNELGDAIDEKKF 63

Query: 383 LTLFANRMCGGSDEDD 430
           ++  +N++     E++
Sbjct: 64  MSFVSNKLRETESEEE 79


>SPAP8A3.08 |cdc4||myosin II light chain|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 141

 Score = 40.7 bits (91), Expect = 1e-04
 Identities = 18/42 (42%), Positives = 26/42 (61%)
 Frame = +2

Query: 221 EFKEAFQLMDHDKDGIIGKNDLRATFDSLGRLASEKELDEMV 346
           EF + FQ+ D D  G+IG  +LR    SLG   S +E+DE++
Sbjct: 78  EFVKGFQVFDKDATGMIGVGELRYVLTSLGEKLSNEEMDELL 119


>SPCC1682.04 |cdc31||centrin|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 176

 Score = 35.9 bits (79), Expect = 0.004
 Identities = 17/44 (38%), Positives = 27/44 (61%)
 Frame = +2

Query: 203 SQKQVAEFKEAFQLMDHDKDGIIGKNDLRATFDSLGRLASEKEL 334
           +++Q  +  EAF+L D DKD  I  ++LRA   +LG  A + E+
Sbjct: 32  TEEQRQDINEAFKLFDSDKDNAIDYHELRAAMRALGFNAEKSEV 75


>SPAC1687.14c |||EF hand family protein, unknown
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 76

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +2

Query: 221 EFKEAFQLMDHDKDGIIGKNDLRATFDSLGRLASEKELDEMV 346
           E +EAF L D    G I   DLR +   LG   ++++L  M+
Sbjct: 13  EAEEAFDLFDVTHKGYIDFEDLRRSCAQLGENLTKEQLQLML 54


>SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1274

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +2

Query: 212 QVAEFKEAFQLMDHDKDGIIGKNDLRATFDSLGRLASE 325
           + A+FK+ F     DKD +  + +L A  + L +LA +
Sbjct: 212 EYAKFKDKFPEAPLDKDNLQTQKELEARIECLKQLAEK 249


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,467,663
Number of Sequences: 5004
Number of extensions: 21331
Number of successful extensions: 69
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)