Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31695
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces po...    26   2.9  
SPAC15A10.05c |mug182||YjeF family protein|Schizosaccharomyces p...    25   6.7  
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces...    25   8.9  

>SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 665

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 13/35 (37%), Positives = 23/35 (65%)
 Frame = -2

Query: 482 TEHVSRKGXV*XDTGHKRHPYLSSEVSGHGPHVQR 378
           TE + RK     +T +++HPY+SS +S + P+V +
Sbjct: 238 TESIFRKKIRSPNTINQKHPYISSTIS-YQPNVHQ 271


>SPAC15A10.05c |mug182||YjeF family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 242

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -2

Query: 122 ILCFNFDRSKVRDTFGGVGASSVTSRVHILHI 27
           I  F+F +  VRD FG + A+ V S++ +L +
Sbjct: 130 IFGFSF-KGPVRDPFGSILAAIVESKIKVLSV 160


>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 897

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = -3

Query: 196 DTARRYRLVLHLYYCFYLVDRVLW 125
           ++A RY  +++  +C+Y+   VLW
Sbjct: 790 ESAPRYDTLIYHSWCYYVAALVLW 813


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,739,094
Number of Sequences: 5004
Number of extensions: 26249
Number of successful extensions: 66
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)