Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31695
         (516 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0694 - 26336742-26336957,26337731-26337950,26338777-26338976     40   0.002
12_02_0747 - 22743259-22743268,22743686-22743773,22744334-227443...    38   0.006
12_02_0748 - 22749911-22750135,22752142-22752358,22753177-22753337     35   0.034
05_05_0209 - 23282848-23284110                                         28   5.1  
11_06_0184 - 21006659-21009823                                         27   8.9  

>11_06_0694 - 26336742-26336957,26337731-26337950,26338777-26338976
          Length = 211

 Score = 39.5 bits (88), Expect = 0.002
 Identities = 18/47 (38%), Positives = 26/47 (55%)
 Frame = +3

Query: 351 SXSNVRGWRALYVGAVATHLGAQIWMTLVSGIXLYXSLXRHMFGRVQ 491
           S + V   R  +V   AT  GA +W+T + GI ++  L RH FG +Q
Sbjct: 32  SGAGVAAARLAHVLCFATAWGAALWVTFIGGIVMFKYLPRHQFGSLQ 78


>12_02_0747 -
           22743259-22743268,22743686-22743773,22744334-22744395,
           22744728-22744915,22746276-22746495,22746647-22746855
          Length = 258

 Score = 37.5 bits (83), Expect = 0.006
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = +3

Query: 399 ATHLGAQIWMTLVSGIXLYXSLXRHMFGRVQ 491
           AT  GA +W T + GI ++ +L RH FG +Q
Sbjct: 51  ATSWGAALWATFIGGIIMFKNLPRHQFGNLQ 81


>12_02_0748 - 22749911-22750135,22752142-22752358,22753177-22753337
          Length = 200

 Score = 35.1 bits (77), Expect = 0.034
 Identities = 13/39 (33%), Positives = 24/39 (61%)
 Frame = +3

Query: 375 RALYVGAVATHLGAQIWMTLVSGIXLYXSLXRHMFGRVQ 491
           +A+++   AT  G  +W  LV G+ ++ +L RH  GR++
Sbjct: 27  KAVHLLCFATSWGVTVWAILVGGVIMFLNLPRHAMGRLR 65


>05_05_0209 - 23282848-23284110
          Length = 420

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 19/52 (36%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
 Frame = +3

Query: 336 MSRPGSXSNVRGWRALYVGAVATHLGAQIWMTLVSGIXLYXSLXRHM-FGRV 488
           M RP   S  RGW A+  GAV+        + LV  I L+  +  H  FG V
Sbjct: 371 MLRPFGRSRARGWWAVAAGAVSLVFPG---LALVIAIPLFVKIFVHFYFGHV 419


>11_06_0184 - 21006659-21009823
          Length = 1054

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +1

Query: 355 LVTSAAGGRCTWGPWPLTS 411
           L T + GG C W PW + +
Sbjct: 80  LYTQSGGGHCGWQPWTMVA 98


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,609,229
Number of Sequences: 37544
Number of extensions: 205207
Number of successful extensions: 511
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 506
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 511
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)