Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31695
         (516 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1528| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   6.9  
SB_19405| Best HMM Match : DMP1 (HMM E-Value=3.8)                      27   9.2  
SB_4811| Best HMM Match : zf-C3HC4 (HMM E-Value=0.013)                 27   9.2  
SB_36873| Best HMM Match : HTH_10 (HMM E-Value=3.4)                    27   9.2  
SB_30460| Best HMM Match : DSPc (HMM E-Value=2.5e-38)                  27   9.2  

>SB_1528| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2409

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
 Frame = +3

Query: 393 AVATHLGAQIWM-TLVSGIXLYXS-LXRHMFGRVQDHP 500
           ++AT  G  I+M TL+ GI    S + R +FG++ DHP
Sbjct: 263 SLATIQGIDIYMATLLIGIMSVGSTIGRLIFGKIADHP 300


>SB_19405| Best HMM Match : DMP1 (HMM E-Value=3.8)
          Length = 551

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -2

Query: 434 KRHPYLSSEVSGHGPHVQRPP 372
           K  PYL+S+   H PH+ R P
Sbjct: 100 KHRPYLASDSCEHRPHLARDP 120


>SB_4811| Best HMM Match : zf-C3HC4 (HMM E-Value=0.013)
          Length = 538

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = +1

Query: 61  EAPTPPKVSRTLERSKLKHNITTVPCQRGRSSSRGGVPAGTS 186
           + P  PK  R     +L HN  T P  RG S +   +  GT+
Sbjct: 121 DLPNKPKPFRVSLTEQLFHNYLTTPYSRGYSENDLSLVTGTA 162


>SB_36873| Best HMM Match : HTH_10 (HMM E-Value=3.4)
          Length = 182

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = +1

Query: 61  EAPTPPKVSRTLERSKLKHNITTVPCQRGRSSSRGGVPAGTS 186
           + P  PK  R     +L HN  T P  RG S +   +  GT+
Sbjct: 121 DLPNKPKPFRVSLTEQLFHNYLTTPYSRGYSENDLSLVTGTA 162


>SB_30460| Best HMM Match : DSPc (HMM E-Value=2.5e-38)
          Length = 550

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -1

Query: 93  ST*HFRWRRSLQRYVASTHITHYYSIRT 10
           ST  + WR  + R +   H++ YYS +T
Sbjct: 83  STCRYSWRPKISREIPIRHLSSYYSSQT 110


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,390,205
Number of Sequences: 59808
Number of extensions: 237967
Number of successful extensions: 626
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 529
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 623
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)