Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31695
         (516 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g62580.1 68416.m07030 expressed protein                             37   0.007
At1g72100.1 68414.m08334 late embryogenesis abundant domain-cont...    30   1.1  
At5g52340.1 68418.m06495 exocyst subunit EXO70 family protein st...    29   2.5  
At1g22600.1 68414.m02822 hypothetical protein                          28   3.2  
At1g75710.1 68414.m08795 zinc finger (C2H2 type) family protein ...    27   5.7  
At4g30230.1 68417.m04299 hypothetical protein                          27   7.5  
At3g59320.1 68416.m06614 integral membrane protein, putative con...    27   9.9  
At3g03200.1 68416.m00316 no apical meristem (NAM) family protein...    27   9.9  
At2g26930.1 68415.m03230 4-diphosphocytidyl-2-C-methyl-D-erythri...    27   9.9  

>At3g62580.1 68416.m07030 expressed protein
          Length = 213

 Score = 37.1 bits (82), Expect = 0.007
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = +3

Query: 399 ATHLGAQIWMTLVSGIXLYXSLXRHMFGRVQ 491
           AT  GA +W T + GI ++ +L RH FG +Q
Sbjct: 50  ATAWGAALWATFIGGIIMFKNLPRHQFGNLQ 80


>At1g72100.1 68414.m08334 late embryogenesis abundant
           domain-containing protein / LEA domain-containing
           protein low similarity to embryogenic gene [Betula
           pendula] GI:4539485; contains Pfam profile PF02987: Late
           embryogenesis abundant protein
          Length = 480

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
 Frame = +3

Query: 396 VATHLGAQIWMTLVSGIXLYXSLXRHMFGRVQD--HPVXY 509
           +A   G  +W+T VS   L   L R  FG VQ   +PV +
Sbjct: 318 IAAAFGTSVWVTFVSSYVLASVLGRQQFGVVQSKLYPVYF 357


>At5g52340.1 68418.m06495 exocyst subunit EXO70 family protein
           strong similarity to unknown protein (emb|CAB83315.1);
           contains Pfam domain PF03081: Exo70 exocyst complex
           subunit;
          Length = 695

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +2

Query: 362 RPRLEGAVRGGRGHSPRSSNMDDACVRYXTILXP 463
           RP  EG   GG+ H P   ++++A     T++ P
Sbjct: 235 RPSSEGEGGGGKTHDPHHKSLENAIFTVPTVIPP 268


>At1g22600.1 68414.m02822 hypothetical protein
          Length = 385

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
 Frame = +3

Query: 396 VATHLGAQIWMTLVSGIXLYXSLXRHMFGRVQD--HPVXY 509
           +A   G  +W+T VSG  L   L    FG VQ   +PV +
Sbjct: 201 IAAAYGMCVWVTFVSGYVLASVLGEQQFGVVQSKMYPVYF 240


>At1g75710.1 68414.m08795 zinc finger (C2H2 type) family protein
           contains zinc finger, C2H2 type, domain, PROSITE:PS00028
          Length = 462

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +3

Query: 45  SRRNAGGSYATESVTYFRAIE 107
           +R NA GSY + S T FRA++
Sbjct: 158 TRSNASGSYTSSSTTSFRAMQ 178


>At4g30230.1 68417.m04299 hypothetical protein 
          Length = 260

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = +1

Query: 73  PPKVSRTLERSKLKHNITTV--PCQRGRSSSRGGVPAGTS 186
           P + SR+L+  KL   +TTV  P +   S+   G P  TS
Sbjct: 132 PMRASRSLDYRKLSRGLTTVHSPPENSSSTKNTGKPETTS 171


>At3g59320.1 68416.m06614 integral membrane protein, putative
           contains Pfam profile PF00892: Integral membrane
           protein; identical to anthocyanin-related membrane
           protein 2 (GI:16416385) [Arabidopsis thaliana]
          Length = 339

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -2

Query: 122 ILCFNFDRSKVRDTFGGVGASSVTSRVHILHITI 21
           ++CFNF+  K + T  G+G   + S +  L  +I
Sbjct: 1   MVCFNFNEMKTKKTLIGLGLGQIISLLSTLIASI 34


>At3g03200.1 68416.m00316 no apical meristem (NAM) family protein
           similar to NAC2 (GI:6456751) {Arabidopsis thaliana}
          Length = 479

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +1

Query: 67  PTPPKVSRTLERSKLKHNITTVP 135
           PTP KV+  +E S L+HNI   P
Sbjct: 228 PTPYKVNTEIECSMLQHNIYLPP 250


>At2g26930.1 68415.m03230 4-diphosphocytidyl-2-C-methyl-D-erythritol
           kinase (CMK) (CDPMEK) identical to
           4-diphosphocytidyl-2-C-methyl-D-erythritol kinase,
           chloroplast precursor (CMK)
           (4-(cytidine-5'-diphospho)-2-C-methyl- D-erythritol
           kinase)(CDPMEK) [Arabidopsis thaliana] SWISS-PROT:O81014
          Length = 383

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -2

Query: 296 RLRCPCRYNVCLRLL*SHXSLFEDIISXFRVL 201
           +L  PC+ NV LR+       F D+ S F V+
Sbjct: 74  KLFSPCKINVFLRITGKREDGFHDLASLFHVI 105


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,427,552
Number of Sequences: 28952
Number of extensions: 144603
Number of successful extensions: 301
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 296
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 301
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)