Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31691
         (334 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q08738 Cluster: Larval cuticle protein LCP-30 precursor...   150   5e-36
UniRef50_Q08SM5 Cluster: Putative uncharacterized protein; n=1; ...    32   2.2  
UniRef50_UPI0000D56367 Cluster: PREDICTED: similar to CG30042-PA...    32   2.9  
UniRef50_Q3JV89 Cluster: Putative uncharacterized protein; n=6; ...    31   5.1  
UniRef50_P54356 Cluster: Protein twisted gastrulation precursor;...    30   8.9  

>UniRef50_Q08738 Cluster: Larval cuticle protein LCP-30 precursor;
           n=1; Bombyx mori|Rep: Larval cuticle protein LCP-30
           precursor - Bombyx mori (Silk moth)
          Length = 239

 Score =  150 bits (364), Expect = 5e-36
 Identities = 74/108 (68%), Positives = 74/108 (68%)
 Frame = +1

Query: 1   ICLSLTVALAAETGKXTPFQYNRXYSTVSPFXYKPXRYVADPGRYDPIRDNSGRYIPDNS 180
           ICLSLTVALAAETGK TPFQYNR YSTVSPF YKP RYVADPGRYDP RDNSGRYIPDNS
Sbjct: 7   ICLSLTVALAAETGKYTPFQYNRVYSTVSPFVYKPGRYVADPGRYDPSRDNSGRYIPDNS 66

Query: 181 GAYNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEDLSKYLGDAYKGS 324
           GAYN                             KEDLSKYLGDAYKGS
Sbjct: 67  GAYNGDRGDRGAAGGFYTGSGTAGGPGGAYVGTKEDLSKYLGDAYKGS 114


>UniRef50_Q08SM5 Cluster: Putative uncharacterized protein; n=1;
           Stigmatella aurantiaca DW4/3-1|Rep: Putative
           uncharacterized protein - Stigmatella aurantiaca DW4/3-1
          Length = 623

 Score = 32.3 bits (70), Expect = 2.2
 Identities = 18/52 (34%), Positives = 25/52 (48%)
 Frame = -1

Query: 271 RRFLRDLQQYRIQCRSHRRXXGLHGXRCRHQSCRECNGQSCRGWGHNGLDQL 116
           R  LRD++++ + CR HR   G  G R   +  R   G+     G  GLD L
Sbjct: 548 RSLLRDVEEHPVACRRHRSTNGGGGGRDSSRRRRGGRGRLGPWRGRRGLDGL 599


>UniRef50_UPI0000D56367 Cluster: PREDICTED: similar to CG30042-PA;
           n=1; Tribolium castaneum|Rep: PREDICTED: similar to
           CG30042-PA - Tribolium castaneum
          Length = 275

 Score = 31.9 bits (69), Expect = 2.9
 Identities = 12/14 (85%), Positives = 12/14 (85%)
 Frame = +1

Query: 151 NSGRYIPDNSGAYN 192
           N GRY PDNSGAYN
Sbjct: 25  NDGRYYPDNSGAYN 38



 Score = 30.3 bits (65), Expect = 8.9
 Identities = 14/23 (60%), Positives = 16/23 (69%)
 Frame = +1

Query: 121 DPGRYDPIRDNSGRYIPDNSGAY 189
           D G Y P  D+SG Y PD+SGAY
Sbjct: 41  DDGSYHP--DDSGAYRPDDSGAY 61


>UniRef50_Q3JV89 Cluster: Putative uncharacterized protein; n=6;
           Burkholderia|Rep: Putative uncharacterized protein -
           Burkholderia pseudomallei (strain 1710b)
          Length = 683

 Score = 31.1 bits (67), Expect = 5.1
 Identities = 15/35 (42%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
 Frame = -1

Query: 241 RIQCRSHRRXXGLHGXRCRHQ-SCRECNGQSCRGW 140
           R +CR HRR       RCRH   CR+     CR W
Sbjct: 100 RCRCRYHRRCHRHRRCRCRHHCRCRDRCRCRCRHW 134


>UniRef50_P54356 Cluster: Protein twisted gastrulation precursor;
           n=2; Sophophora|Rep: Protein twisted gastrulation
           precursor - Drosophila melanogaster (Fruit fly)
          Length = 249

 Score = 30.3 bits (65), Expect = 8.9
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = -1

Query: 235 QCRSHRRXXGLHGXRCRHQSCRECNGQSCRGWGHN 131
           +CR      G    R  H  C EC G++C  +G N
Sbjct: 165 KCRQQCESMGASSYRWFHDGCCECVGENCLNYGIN 199


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.316    0.136    0.426 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 251,137,079
Number of Sequences: 1657284
Number of extensions: 3579620
Number of successful extensions: 7322
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7041
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7307
length of database: 575,637,011
effective HSP length: 86
effective length of database: 433,110,587
effective search space used: 10394654088
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.5 bits)