Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31691
         (334 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29A4.20 |||RNA polymerase II elongator complex, histone acet...    25   3.0  
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    24   5.3  
SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu...    24   7.0  
SPCC1442.07c |||ubiquitin/metalloprotease fusion protein|Schizos...    23   9.2  

>SPAC29A4.20 |||RNA polymerase II elongator complex, histone
           acetyltransferase subunit |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 544

 Score = 25.0 bits (52), Expect = 3.0
 Identities = 13/30 (43%), Positives = 14/30 (46%)
 Frame = +1

Query: 73  YSTVSPFXYKPXRYVADPGRYDPIRDNSGR 162
           YST S   Y+P    A   RYDP     GR
Sbjct: 119 YSTQSYTGYEPTSMRAIRARYDPYEQARGR 148


>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
           Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 24.2 bits (50), Expect = 5.3
 Identities = 11/44 (25%), Positives = 20/44 (45%)
 Frame = +1

Query: 61  YNRXYSTVSPFXYKPXRYVADPGRYDPIRDNSGRYIPDNSGAYN 192
           YN      SP+ +    +V + G   P+  +SG +  D++   N
Sbjct: 146 YNSVPYGSSPYDFSNSSFVGNSGSGTPLDGDSGSFYADSANLTN 189


>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1405

 Score = 23.8 bits (49), Expect = 7.0
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -1

Query: 232  CRSHRRXXGLHGXRCRHQSCR 170
            C +  R   ++G RC ++SCR
Sbjct: 1321 CGNRTRQMSVYGKRCCNKSCR 1341


>SPCC1442.07c |||ubiquitin/metalloprotease fusion
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 282

 Score = 23.4 bits (48), Expect = 9.2
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +1

Query: 100 KPXRYVADPGRYDPIRDN 153
           KP  YV+D   Y P +DN
Sbjct: 235 KPGSYVSDRASYTPQQDN 252


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.316    0.136    0.426 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 973,121
Number of Sequences: 5004
Number of extensions: 13153
Number of successful extensions: 25
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 93942212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.5 bits)