Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31691
         (334 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43658| Best HMM Match : Pkinase (HMM E-Value=1.49939e-42)           28   1.6  
SB_10837| Best HMM Match : Pkinase (HMM E-Value=1.49939e-42)           28   1.6  
SB_17212| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.0  
SB_42811| Best HMM Match : SRCR (HMM E-Value=0)                        26   6.6  
SB_40833| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.8  
SB_40225| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.8  

>SB_43658| Best HMM Match : Pkinase (HMM E-Value=1.49939e-42)
          Length = 457

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 12/33 (36%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
 Frame = -1

Query: 262 LRDLQQYRIQCRSHRRXXGLHGXR-CRHQSCRE 167
           L+D   Y + CR  R    LH  R C H  C +
Sbjct: 56  LKDADHYNMMCRGPRGKPNLHDTRCCTHDLCNK 88


>SB_10837| Best HMM Match : Pkinase (HMM E-Value=1.49939e-42)
          Length = 386

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 12/33 (36%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
 Frame = -1

Query: 262 LRDLQQYRIQCRSHRRXXGLHGXR-CRHQSCRE 167
           L+D   Y + CR  R    LH  R C H  C +
Sbjct: 59  LKDADHYNMMCRGPRGKPNLHDTRCCTHDLCNK 91


>SB_17212| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 426

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = -1

Query: 232 CRSHRRXXGLHGXRCRHQSCRECNGQSCRGWGH 134
           CRS RR   L G   R + C +   Q    +GH
Sbjct: 249 CRSGRRHVRLRGADARKRGCAKLGVQEGNAFGH 281


>SB_42811| Best HMM Match : SRCR (HMM E-Value=0)
          Length = 854

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 16/35 (45%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
 Frame = -1

Query: 226 SHRRXXGLHGXRCR--HQSCRECNGQSCRGWGHNG 128
           S R    L G  CR    S R C   S RGWG+NG
Sbjct: 309 SGRGRVWLSGVNCRGYESSIRTC---STRGWGNNG 340


>SB_40833| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1300

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -1

Query: 208 GLHGXRCRHQSCRECNG 158
           G+H  R  H+SC EC G
Sbjct: 762 GIHRCRPCHESCAECTG 778


>SB_40225| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1442

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = -1

Query: 253  LQQYRIQCRSHRRXXGLHGXRCRHQSCRECNGQSCRG 143
            L+Q  I+C + +    L    C H  C +C+ + C G
Sbjct: 1108 LKQNGIECPNCKFRYDLAKGGCMHFKCGQCSHEYCSG 1144


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.316    0.136    0.426 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,925,948
Number of Sequences: 59808
Number of extensions: 119769
Number of successful extensions: 274
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 244
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 273
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 475580678
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.5 bits)