Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31691
         (334 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23147-5|AAC46686.2|  308|Caenorhabditis elegans Hypothetical pr...    26   5.7  
L10986-3|AAA28018.1|  650|Caenorhabditis elegans Abnormal cell m...    26   7.5  
L10986-2|AAK84523.2|  667|Caenorhabditis elegans Abnormal cell m...    26   7.5  
L10986-1|AAR25648.1|  779|Caenorhabditis elegans Abnormal cell m...    26   7.5  
Z75955-2|CAB00112.1|  355|Caenorhabditis elegans Hypothetical pr...    25   10.0 

>U23147-5|AAC46686.2|  308|Caenorhabditis elegans Hypothetical
           protein C18H9.1 protein.
          Length = 308

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 16/62 (25%), Positives = 26/62 (41%)
 Frame = -1

Query: 301 GIC*GPPWFXRRFLRDLQQYRIQCRSHRRXXGLHGXRCRHQSCRECNGQSCRGWGHNGLD 122
           G C GP     RFL D Q+  ++   H +  G +  +   +S R   G       H+ + 
Sbjct: 21  GGCIGPKSVLERFLNDKQKTELRKMVHNKFDGSNAEQVLEESNRYVYGHVTEEQWHSIVP 80

Query: 121 QL 116
           +L
Sbjct: 81  EL 82


>L10986-3|AAA28018.1|  650|Caenorhabditis elegans Abnormal cell
           migration protein10, isoform b protein.
          Length = 650

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +3

Query: 27  GRRNWKXHSFPVQPXLLY 80
           GR++WK H F ++P  LY
Sbjct: 340 GRKSWKKHYFVLRPSGLY 357


>L10986-2|AAK84523.2|  667|Caenorhabditis elegans Abnormal cell
           migration protein10, isoform a protein.
          Length = 667

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +3

Query: 27  GRRNWKXHSFPVQPXLLY 80
           GR++WK H F ++P  LY
Sbjct: 357 GRKSWKKHYFVLRPSGLY 374


>L10986-1|AAR25648.1|  779|Caenorhabditis elegans Abnormal cell
           migration protein10, isoform c protein.
          Length = 779

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +3

Query: 27  GRRNWKXHSFPVQPXLLY 80
           GR++WK H F ++P  LY
Sbjct: 469 GRKSWKKHYFVLRPSGLY 486


>Z75955-2|CAB00112.1|  355|Caenorhabditis elegans Hypothetical
           protein R07B7.3 protein.
          Length = 355

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +1

Query: 52  PFQYNRXYSTVSPFXYKPXRYVAD 123
           P Q N     V P  Y+P +YV D
Sbjct: 319 PVQRNNVVRQVQPVQYRPVQYVTD 342


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.316    0.136    0.426 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,576,257
Number of Sequences: 27780
Number of extensions: 84215
Number of successful extensions: 172
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 408121444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.5 bits)