Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31684
         (500 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI00006D0E19 Cluster: Leucine Rich Repeat family prote...    33   4.8  
UniRef50_A4XFU6 Cluster: Binding-protein-dependent transport sys...    33   4.8  
UniRef50_UPI000049A306 Cluster: homeobox protein; n=2; Entamoeba...    32   6.3  

>UniRef50_UPI00006D0E19 Cluster: Leucine Rich Repeat family protein;
            n=1; Tetrahymena thermophila SB210|Rep: Leucine Rich
            Repeat family protein - Tetrahymena thermophila SB210
          Length = 5121

 Score = 32.7 bits (71), Expect = 4.8
 Identities = 26/83 (31%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
 Frame = +1

Query: 151  KDCLKLN*RFLKRQHGV-CITSIIIKLPDYKHQYLV*KLVFNKKEMIFLIF*RIQK*STY 327
            K+ +K+  + LKR   + CITS +I L D ++     KL  N+ ++I   + +IQ  S +
Sbjct: 3876 KELMKILSQILKRGDNIFCITSFLITLGDIRN-----KLSDNEFDLITRSYNQIQYLSPF 3930

Query: 328  I*NNSHKVASLRLQYTTSY*KSK 396
            + NN ++  +  +Q+T+   KSK
Sbjct: 3931 LFNNVYQGFNHIIQHTSVSPKSK 3953


>UniRef50_A4XFU6 Cluster: Binding-protein-dependent transport
           systems inner membrane component precursor; n=1;
           Caldicellulosiruptor saccharolyticus DSM 8903|Rep:
           Binding-protein-dependent transport systems inner
           membrane component precursor - Caldicellulosiruptor
           saccharolyticus (strain ATCC 43494 / DSM 8903)
          Length = 279

 Score = 32.7 bits (71), Expect = 4.8
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = -3

Query: 315 FLNALKNQKYHFFFVKHQFSNQILVFIVR*FNYYTGDTYAMLAFK 181
           ++NA+K  K H +F    F+  I V ++  F++  G  +A   FK
Sbjct: 60  YVNAIKTAKMHIYFFNSLFTTVISVILIVIFSFIVGYFFARYQFK 104


>UniRef50_UPI000049A306 Cluster: homeobox protein; n=2; Entamoeba
           histolytica HM-1:IMSS|Rep: homeobox protein - Entamoeba
           histolytica HM-1:IMSS
          Length = 245

 Score = 32.3 bits (70), Expect = 6.3
 Identities = 26/71 (36%), Positives = 39/71 (54%), Gaps = 7/71 (9%)
 Frame = +3

Query: 288 ISDFLTHSKIVNLYLE*FS*SC-------LAEVTVHYKLLKIKTIFP*RQLXSLNKYRRH 446
           IS F +  +I+NLY E +S          +  + +H+KLL IK+IF       LN Y  H
Sbjct: 76  ISSFTSLVEILNLYAEYYSSQLNSSLLPSILPIELHFKLLSIKSIF-------LNIY-SH 127

Query: 447 VKTLVEINLKE 479
           +K L+ +NLK+
Sbjct: 128 LKYLLILNLKD 138


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 421,396,568
Number of Sequences: 1657284
Number of extensions: 7502482
Number of successful extensions: 12254
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 11985
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12253
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 29691847201
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)