Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31684
         (500 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g57870.1 68416.m06451 ubiquitin-conjugating enzyme, putative ...    27   5.4  
At3g13600.1 68416.m01712 calmodulin-binding family protein conta...    27   7.1  

>At3g57870.1 68416.m06451 ubiquitin-conjugating enzyme, putative
           strong similarity to SP|P50550 Ubiquitin-like protein
           SUMO-1 conjugating enzyme (EC 6.3.2.19) (SUMO- 1-protein
           ligase) (Ubiquitin carrier protein)
           (Ubiquitin-conjugating enzyme UbcE2A) {Xenopus laevis};
           contains Pfam profile PF00179: Ubiquitin-conjugating
           enzyme
          Length = 160

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 13/52 (25%), Positives = 25/52 (48%)
 Frame = -1

Query: 200 TPCWRLRNLQFSFKQSFHIKQLTVGSLDIVQSVQMEQYFQITYYYLTIEHPV 45
           T C  + N  + ++ +  +KQ+ VG  D++ +       Q   Y+L  + PV
Sbjct: 92  TVCLSILNEDYGWRPAITVKQILVGIQDLLDTPNPADPAQTDGYHLFCQDPV 143


>At3g13600.1 68416.m01712 calmodulin-binding family protein contains
           Pfam profile PF00612: IQ calmodulin-binding motif
          Length = 605

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = -3

Query: 183 KKSSI*F*TIFPHQTTHSRFSRHRTECSN-GAVFSNN 76
           K+SSI F  I  H+T  SR+SR RT  +  G   S N
Sbjct: 146 KRSSISFFDIEKHETAISRWSRARTRAAKVGKGLSKN 182


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,081,529
Number of Sequences: 28952
Number of extensions: 161037
Number of successful extensions: 229
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 226
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 229
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 888318720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)