Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31683
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit Psm3|Sch...    26   2.9  
SPBC1105.04c |cbp1|abp1|CENP-B homolog|Schizosaccharomyces pombe...    26   3.8  
SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein Pkl1|S...    26   3.8  
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    25   6.7  
SPAC23C4.13 |bet1||SNARE Bet1|Schizosaccharomyces pombe|chr 1|||...    25   8.9  
SPAC25H1.02 |jmj1||Jmj1 protein|Schizosaccharomyces pombe|chr 1|...    25   8.9  
SPBC354.13 |rga6||GTPase activating protein Rga6|Schizosaccharom...    25   8.9  
SPBC8D2.13 |||SHQ1 family protein|Schizosaccharomyces pombe|chr ...    25   8.9  

>SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit
            Psm3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1194

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 13/56 (23%), Positives = 26/56 (46%)
 Frame = +3

Query: 315  GKPKNIDDANEDTIKRVCKDYHERIARLEDEKFDLEYIXXRKDMEIXDLNSQVNDL 482
            G    ID++  +++KR    Y  ++  ++     LE    R + EI D  +++  L
Sbjct: 837  GSDNRIDESELNSVKRSLLKYENKLQIIKSSSSGLEEQMQRINSEISDKRNELESL 892


>SPBC1105.04c |cbp1|abp1|CENP-B homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 522

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +3

Query: 324 KNIDDANEDTIKRVCKDYHERIARLEDEKFDLEYIXXRKD 443
           +NI D++ED I ++   Y +  A   DE+   E+    KD
Sbjct: 435 ENIVDSSEDIINQIASQYMDDRAFETDEEESTEFQITTKD 474


>SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein
           Pkl1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 832

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = -2

Query: 422 FQIEFFIFKTSDAFMVVFANPLNSIFVGVVNVLRFTAPLLD 300
           + +++ + K +   M V  +PL S F+  +N LRF   + D
Sbjct: 781 YLLKYSLGKGAKTLMFVNVSPLKSQFMDTLNSLRFATKVND 821


>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1610

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = +3

Query: 12  G*TIS*GHLLILAVGHPKPTQQQWRMMKRRRPNRPTSTASALRC 143
           G T+S   LL++ + + KP   Q++    +R +R  S  ++L C
Sbjct: 270 GVTVSLSDLLLIILKYDKPFVTQYKEKYFKRVSRMISRLTSLTC 313


>SPAC23C4.13 |bet1||SNARE Bet1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 117

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = +2

Query: 428 RXKERYGDLRPELPSQRPQ 484
           R KER GD+ P   SQ PQ
Sbjct: 7   RRKERNGDMLPLYESQSPQ 25


>SPAC25H1.02 |jmj1||Jmj1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 464

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +3

Query: 342 NEDTIKRVCKDYHERIARLEDEKFDLEYIXXRKDMEIXDLN 464
           N++ IK   + Y ERI   ED+   L+ +    + E  + N
Sbjct: 87  NDNDIKNFIRSYAERIVNNEDKNVFLDSLLLSPNYEYLEEN 127


>SPBC354.13 |rga6||GTPase activating protein
           Rga6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 733

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -2

Query: 374 VFANPLNSIFVGVVNVLRFTAPLLDDAPP 288
           VF  P+  +     N+ +FT P  + APP
Sbjct: 299 VFGKPIGDLTSDPTNLCKFTFPTPECAPP 327


>SPBC8D2.13 |||SHQ1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 451

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = +3

Query: 393 RLEDEKFDLE-YIXXRKDMEIXD-LNSQVNDLRGKFV 497
           +LEDEKFD E Y+    D E+ D +   + D  G+F+
Sbjct: 206 QLEDEKFDAEHYMADFYDREMIDEILHYIPDYIGEFL 242


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,410,651
Number of Sequences: 5004
Number of extensions: 18507
Number of successful extensions: 87
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)