Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31683
         (516 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_34007| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.74 
SB_56523| Best HMM Match : Pox_A_type_inc (HMM E-Value=0)              29   1.7  
SB_40971| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.0  
SB_318| Best HMM Match : No HMM Matches (HMM E-Value=.)                28   4.0  
SB_20508| Best HMM Match : Filament (HMM E-Value=0.037)                27   6.9  
SB_56522| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.6e-30)        27   9.2  

>SB_34007| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1411

 Score = 30.7 bits (66), Expect = 0.74
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = +3

Query: 348 DTIKRVCKDYHERIARLEDEKFDLEYIXXRKDMEIXDLNSQVNDLRGK 491
           D +++  K    +  +LE +  DL+    RKD+ I DLN  V D + K
Sbjct: 400 DELRKTKKKMQVQYEKLEHQLDDLKVQLKRKDVVIADLNKVVEDYKRK 447


>SB_56523| Best HMM Match : Pox_A_type_inc (HMM E-Value=0)
          Length = 2858

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 12/54 (22%), Positives = 31/54 (57%)
 Frame = +3

Query: 339  ANEDTIKRVCKDYHERIARLEDEKFDLEYIXXRKDMEIXDLNSQVNDLRGKFVK 500
            A+++ I+   +    ++++++DE  +L+    R+  EI DL +++N+L     +
Sbjct: 1352 ASKEYIEGQLESLKAQMSKIKDENENLKESDARRQQEILDLENRINELENMLAR 1405


>SB_40971| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 828

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = +3

Query: 345 EDTIKRVCKDYHERIARLEDEKFDLEYIXXRKDMEIXDLNSQV 473
           ED + R  +   +RI RLE    DL+ +  R      D+N++V
Sbjct: 22  EDLMTRRFRGLEDRIGRLESTVSDLQLLQRRNGRFFSDINTRV 64


>SB_318| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1081

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 10/24 (41%), Positives = 20/24 (83%)
 Frame = +3

Query: 336 DANEDTIKRVCKDYHERIARLEDE 407
           + +E+ +++V +DY E+IARL++E
Sbjct: 144 EPDEEQLEQVRRDYEEQIARLQEE 167


>SB_20508| Best HMM Match : Filament (HMM E-Value=0.037)
          Length = 722

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = +3

Query: 324 KNIDDANEDTIKRVCKDYHERIARLEDEKFDLEYIXXRKDMEIXDL 461
           + +  +NE  + RV  D  E  + L+ +K DLE I  + +    +L
Sbjct: 51  EELQTSNESELMRVRSDLEEMTSLLQSKKVDLEKIKEQNEKAAKEL 96


>SB_56522| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.6e-30)
          Length = 3071

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
 Frame = +3

Query: 399  EDEKFD--LEYIXXRKDMEIXDLNSQVNDLRGKFVK 500
            ++EKF   L  +  RKD  I +LN+++  L+G + K
Sbjct: 997  QNEKFSETLNSVISRKDKAIDELNAKIRHLQGDYDK 1032


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,216,072
Number of Sequences: 59808
Number of extensions: 166396
Number of successful extensions: 522
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 473
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 522
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)