Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31680
         (454 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P36188 Cluster: Troponin I; n=50; cellular organisms|Re...    63   2e-09
UniRef50_Q9XUN9 Cluster: Troponin I 3; n=6; Caenorhabditis|Rep: ...    34   1.6  
UniRef50_Q23C48 Cluster: Putative uncharacterized protein; n=2; ...    33   2.2  

>UniRef50_P36188 Cluster: Troponin I; n=50; cellular organisms|Rep:
           Troponin I - Drosophila melanogaster (Fruit fly)
          Length = 269

 Score = 63.3 bits (147), Expect = 2e-09
 Identities = 33/98 (33%), Positives = 46/98 (46%)
 Frame = +2

Query: 161 IDRKRAEVRKRMEEASXXXXXXXGFMTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 340
           I+RKRAEVRKRMEEAS       GFMTP                                
Sbjct: 75  IERKRAEVRKRMEEASKAKKAKKGFMTPERKKKLRLLLRKKAAEELKKEQERKAAERRRI 134

Query: 341 XXXXCGXPKNIDDANEDTIKRVCKDYHERIARXEDEKF 454
               CG P+N+ DA+E  ++ +C++Y+ER+   E +K+
Sbjct: 135 IEERCGSPRNLSDASEGELQEICEEYYERMYICEGQKW 172


>UniRef50_Q9XUN9 Cluster: Troponin I 3; n=6; Caenorhabditis|Rep:
           Troponin I 3 - Caenorhabditis elegans
          Length = 260

 Score = 33.9 bits (74), Expect = 1.6
 Identities = 15/25 (60%), Positives = 18/25 (72%)
 Frame = +2

Query: 170 KRAEVRKRMEEASXXXXXXXGFMTP 244
           K+AEVRKRMEEA+       GF+TP
Sbjct: 31  KKAEVRKRMEEAAKKGSKKKGFLTP 55


>UniRef50_Q23C48 Cluster: Putative uncharacterized protein; n=2;
           Tetrahymena thermophila SB210|Rep: Putative
           uncharacterized protein - Tetrahymena thermophila SB210
          Length = 1100

 Score = 33.5 bits (73), Expect = 2.2
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +2

Query: 17  SNCGSCWLNHLVGPSSNSCSRTP*TNT 97
           S+C  C+ N  + P++NSC +TP  NT
Sbjct: 363 SSCTDCYNNQYLNPNTNSCDQTPPPNT 389


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 289,787,760
Number of Sequences: 1657284
Number of extensions: 3468604
Number of successful extensions: 8590
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8412
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8589
length of database: 575,637,011
effective HSP length: 94
effective length of database: 419,852,315
effective search space used: 23511729640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)