Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31680
         (454 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292331-1|CAL23143.2|  437|Tribolium castaneum gustatory recept...    22   2.3  
AM292360-1|CAL23172.2|  427|Tribolium castaneum gustatory recept...    20   9.4  
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    20   9.4  

>AM292331-1|CAL23143.2|  437|Tribolium castaneum gustatory receptor
           candidate 10 protein.
          Length = 437

 Score = 22.2 bits (45), Expect = 2.3
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -3

Query: 104 LLLCWFRVSYCKN*KMALRDGLANTSHS 21
           ++L  FR++  +N ++A R  +AN S S
Sbjct: 403 VMLMQFRLTLMRNAQLAARRAIANVSVS 430


>AM292360-1|CAL23172.2|  427|Tribolium castaneum gustatory receptor
           candidate 39 protein.
          Length = 427

 Score = 20.2 bits (40), Expect = 9.4
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = -3

Query: 104 LLLCWFRVSYCKN*KMALRDGLAN 33
           ++L  FR++  +N ++A R  +AN
Sbjct: 403 VMLMQFRLTLMRNAQLAARRAIAN 426


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 20.2 bits (40), Expect = 9.4
 Identities = 9/18 (50%), Positives = 9/18 (50%)
 Frame = -3

Query: 143 SSPPRDAFFHHPPLLLCW 90
           S P   AFFH   L L W
Sbjct: 49  SLPTNPAFFHPGLLPLAW 66


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 66,420
Number of Sequences: 336
Number of extensions: 870
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 10301074
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)