Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31680
         (454 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039041-9|AAB94188.2|  194|Caenorhabditis elegans Troponin i pr...    35   0.032
AB107583-1|BAD89381.1|  194|Caenorhabditis elegans troponin I 4 ...    35   0.032
Z81593-2|CAB04737.1|  260|Caenorhabditis elegans Hypothetical pr...    34   0.056
AB107359-1|BAD89380.1|  260|Caenorhabditis elegans troponin I 3 ...    34   0.056
U40951-3|AAG01564.2|  242|Caenorhabditis elegans Uncoordinated p...    33   0.13 
AB107357-1|BAD89378.1|  242|Caenorhabditis elegans troponin I 2 ...    33   0.13 
Z66562-5|CAA91466.1|  250|Caenorhabditis elegans Hypothetical pr...    29   2.1  
AB107358-1|BAD89379.1|  250|Caenorhabditis elegans troponin I 1 ...    29   2.1  

>AF039041-9|AAB94188.2|  194|Caenorhabditis elegans Troponin i
           protein 4 protein.
          Length = 194

 Score = 34.7 bits (76), Expect = 0.032
 Identities = 15/27 (55%), Positives = 19/27 (70%)
 Frame = +2

Query: 164 DRKRAEVRKRMEEASXXXXXXXGFMTP 244
           +RK+ EVRKR+EEAS       GF+TP
Sbjct: 16  ERKKEEVRKRLEEASRMKKAKKGFLTP 42


>AB107583-1|BAD89381.1|  194|Caenorhabditis elegans troponin I 4
           protein.
          Length = 194

 Score = 34.7 bits (76), Expect = 0.032
 Identities = 15/27 (55%), Positives = 19/27 (70%)
 Frame = +2

Query: 164 DRKRAEVRKRMEEASXXXXXXXGFMTP 244
           +RK+ EVRKR+EEAS       GF+TP
Sbjct: 16  ERKKEEVRKRLEEASRMKKAKKGFLTP 42


>Z81593-2|CAB04737.1|  260|Caenorhabditis elegans Hypothetical
           protein T20B3.2 protein.
          Length = 260

 Score = 33.9 bits (74), Expect = 0.056
 Identities = 15/25 (60%), Positives = 18/25 (72%)
 Frame = +2

Query: 170 KRAEVRKRMEEASXXXXXXXGFMTP 244
           K+AEVRKRMEEA+       GF+TP
Sbjct: 31  KKAEVRKRMEEAAKKGSKKKGFLTP 55


>AB107359-1|BAD89380.1|  260|Caenorhabditis elegans troponin I 3
           protein.
          Length = 260

 Score = 33.9 bits (74), Expect = 0.056
 Identities = 15/25 (60%), Positives = 18/25 (72%)
 Frame = +2

Query: 170 KRAEVRKRMEEASXXXXXXXGFMTP 244
           K+AEVRKRMEEA+       GF+TP
Sbjct: 31  KKAEVRKRMEEAAKKGSKKKGFLTP 55


>U40951-3|AAG01564.2|  242|Caenorhabditis elegans Uncoordinated
           protein 27 protein.
          Length = 242

 Score = 32.7 bits (71), Expect = 0.13
 Identities = 14/27 (51%), Positives = 18/27 (66%)
 Frame = +2

Query: 164 DRKRAEVRKRMEEASXXXXXXXGFMTP 244
           + K+AEVRKR+EEA        GF+TP
Sbjct: 17  EAKKAEVRKRLEEAGNKKKAKKGFLTP 43


>AB107357-1|BAD89378.1|  242|Caenorhabditis elegans troponin I 2
           protein.
          Length = 242

 Score = 32.7 bits (71), Expect = 0.13
 Identities = 14/27 (51%), Positives = 18/27 (66%)
 Frame = +2

Query: 164 DRKRAEVRKRMEEASXXXXXXXGFMTP 244
           + K+AEVRKR+EEA        GF+TP
Sbjct: 17  EAKKAEVRKRLEEAGNKKKAKKGFLTP 43


>Z66562-5|CAA91466.1|  250|Caenorhabditis elegans Hypothetical
           protein F42E11.4 protein.
          Length = 250

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 14/27 (51%), Positives = 18/27 (66%)
 Frame = +2

Query: 164 DRKRAEVRKRMEEASXXXXXXXGFMTP 244
           + K+AEVRKR+EEA        GF+TP
Sbjct: 30  EAKKAEVRKRLEEAG-QKKQKKGFLTP 55


>AB107358-1|BAD89379.1|  250|Caenorhabditis elegans troponin I 1
           protein.
          Length = 250

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 14/27 (51%), Positives = 18/27 (66%)
 Frame = +2

Query: 164 DRKRAEVRKRMEEASXXXXXXXGFMTP 244
           + K+AEVRKR+EEA        GF+TP
Sbjct: 30  EAKKAEVRKRLEEAG-QKKQKKGFLTP 55


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,601,859
Number of Sequences: 27780
Number of extensions: 80861
Number of successful extensions: 271
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 265
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 271
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 799252350
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)