Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31678
         (357 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|ch...    45   4e-06
SPAP8A3.08 |cdc4||myosin II light chain|Schizosaccharomyces pomb...    42   2e-05
SPBC215.01 ||SPBC3B9.20|GTPase activating protein|Schizosaccharo...    27   0.86 
SPCC1682.04 |cdc31||centrin|Schizosaccharomyces pombe|chr 3|||Ma...    27   1.1  
SPAC19E9.01c |nup40||nucleoporin Nup40|Schizosaccharomyces pombe...    24   6.1  
SPCC830.06 |||calcineurin regulatory subunit |Schizosaccharomyce...    24   8.0  

>SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 150

 Score = 44.8 bits (101), Expect = 4e-06
 Identities = 32/110 (29%), Positives = 50/110 (45%), Gaps = 2/110 (1%)
 Frame = +2

Query: 32  MSDLSKNDVERASF--AFSIYDFEGKGKIDAFNLGDLLRALNSNPTLATIXXXXXXXXXX 205
           M+  +  D + A F  AFS++D +  G I +  LG ++R+L  +PT A +          
Sbjct: 1   MTTRNLTDEQIAEFREAFSLFDRDQDGNITSNELGVVMRSLGQSPTAAELQDMINEVDAD 60

Query: 206 XXXXXXXXXXPIYSQAKKDKDXGAYEDFLECLKLXDKNENGLMLGAELTH 355
                      +   A+K KD    E+  E  K+ DK+ NG +   ELTH
Sbjct: 61  GNGTIDFTEF-LTMMARKMKDTDNEEEVREAFKVFDKDGNGYITVEELTH 109


>SPAP8A3.08 |cdc4||myosin II light chain|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 141

 Score = 42.3 bits (95), Expect = 2e-05
 Identities = 19/34 (55%), Positives = 24/34 (70%)
 Frame = +2

Query: 74  AFSIYDFEGKGKIDAFNLGDLLRALNSNPTLATI 175
           AFS++D  G G+I   ++GDLLRA   NPTLA I
Sbjct: 11  AFSLFDRHGTGRIPKTSIGDLLRACGQNPTLAEI 44


>SPBC215.01 ||SPBC3B9.20|GTPase activating
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 834

 Score = 27.1 bits (57), Expect = 0.86
 Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = +2

Query: 32  MSDLSKNDVER-ASFAFSIYDFEGKGKID 115
           +++L   DV R  SF F +YDF G G +D
Sbjct: 605 IAELKFRDVMRNISFIFELYDFNGDGFMD 633


>SPCC1682.04 |cdc31||centrin|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 176

 Score = 26.6 bits (56), Expect = 1.1
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +2

Query: 41  LSKNDVERASFAFSIYDFEGKGKIDAFNLGDLLRALNSN 157
           + ++ +E    AF ++D +  GKI   NL  + + LN N
Sbjct: 104 VERDPLEEIKRAFELFDDDETGKISLRNLRRVAKELNEN 142


>SPAC19E9.01c |nup40||nucleoporin Nup40|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 371

 Score = 24.2 bits (50), Expect = 6.1
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +2

Query: 56  VERASFAFSIYDFEGKGKIDAFNLG 130
           +E A    SIYDF    +I+A N+G
Sbjct: 117 IEDAPPTQSIYDFSSSRQINALNVG 141


>SPCC830.06 |||calcineurin regulatory subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 174

 Score = 23.8 bits (49), Expect = 8.0
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +2

Query: 50  NDVERASFAFSIYDFEGKGKI 112
           N  E+  FAF IYD +  G I
Sbjct: 90  NKEEKLKFAFKIYDIDRDGYI 110


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,220,253
Number of Sequences: 5004
Number of extensions: 17591
Number of successful extensions: 56
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 107972554
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)