Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31677
         (400 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15A10.08 |ain1||alpha-actinin|Schizosaccharomyces pombe|chr ...    56   2e-09
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual      29   0.27 
SPAC1783.08c |rpl1502|rpl15-2|60S ribosomal protein L15b|Schizos...    28   0.46 
SPCC576.11 |rpl15||60S ribosomal protein L15|Schizosaccharomyces...    28   0.61 
SPBC365.14c |||UDP-glucose 4-epimerase |Schizosaccharomyces pomb...    27   1.4  
SPAC16E8.15 |tif45|tif1|translation initiation factor eIF4E, 4F ...    27   1.4  
SPAC6C3.04 |cit1||citrate synthase|Schizosaccharomyces pombe|chr...    24   7.6  

>SPAC15A10.08 |ain1||alpha-actinin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 621

 Score = 56.0 bits (129), Expect = 2e-09
 Identities = 27/74 (36%), Positives = 44/74 (59%), Gaps = 2/74 (2%)
 Frame = +2

Query: 179 WEKXHKKTFTAWCNSHLRKAGT-GIENIEDDFRNGLKLMLLLEVIXGETLPKPDRG-KMR 352
           W+    +TFT W N+ L       + ++  D  +G+ L+ LLE+I  E L + +R  +MR
Sbjct: 6   WQSVQNRTFTKWFNTKLSSRDLPSVFDLRKDLSDGILLIQLLEIIGDENLGRYNRNPRMR 65

Query: 353 FHKIANVNKALDFI 394
            H++ NVNKAL++I
Sbjct: 66  VHRLENVNKALEYI 79


>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1489

 Score = 29.1 bits (62), Expect = 0.27
 Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = +2

Query: 260 EDDFRNGLKLMLLLEVIXGETLPKPD-RGKMRFHKIANVNKALDFI 394
           E   RNG+ L LL++    + L K     +++F    N+NK LDFI
Sbjct: 66  EQSLRNGVVLALLVQKFQPDKLIKIFYSNELQFRHSDNINKFLDFI 111


>SPAC1783.08c |rpl1502|rpl15-2|60S ribosomal protein
           L15b|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 201

 Score = 28.3 bits (60), Expect = 0.46
 Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 5/51 (9%)
 Frame = +1

Query: 205 HSXVQQSPQKSW-----HRHREHRGRLPQWXEAHVAAGGHLRRDSAQARPW 342
           H  +++ P+ +W     H+HRE RG      ++     GH   +S Q   W
Sbjct: 139 HKAIRRDPRINWIVNPVHKHRESRGLTSIGKKSRGIGKGHRYNNSPQHATW 189


>SPCC576.11 |rpl15||60S ribosomal protein L15|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 201

 Score = 27.9 bits (59), Expect = 0.61
 Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 5/51 (9%)
 Frame = +1

Query: 205 HSXVQQSPQKSW-----HRHREHRGRLPQWXEAHVAAGGHLRRDSAQARPW 342
           H  +++ P+ +W     H+HRE RG      ++     GH   +S Q   W
Sbjct: 139 HKAIRRDPRINWIVNPVHKHRESRGLTSIGKKSRGIGKGHRFNNSPQHATW 189


>SPBC365.14c |||UDP-glucose 4-epimerase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 355

 Score = 26.6 bits (56), Expect = 1.4
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +1

Query: 283 EAHVAAGGHLRRDSAQARPW 342
           EAHVAA  +LR+     RPW
Sbjct: 250 EAHVAALDYLRQHFVSCRPW 269


>SPAC16E8.15 |tif45|tif1|translation initiation factor eIF4E, 4F
           complex subunit |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 218

 Score = 26.6 bits (56), Expect = 1.4
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = +2

Query: 155 REGLLHPAWEKXHKKTFTAWCNSHLRKAGTGIENI 259
           REG+  P WE  H KT   W   +  + G  ++ +
Sbjct: 97  REGV-RPEWEDVHNKTGGKWAFQNKGRGGNALDEM 130


>SPAC6C3.04 |cit1||citrate synthase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 473

 Score = 24.2 bits (50), Expect = 7.6
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -1

Query: 79  SYMVTALTVDSMFVRAYDR 23
           S  VTAL  DS F +AY+R
Sbjct: 178 SLAVTALEHDSAFAKAYER 196


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,423,746
Number of Sequences: 5004
Number of extensions: 25225
Number of successful extensions: 78
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 134126124
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)