Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31677
(400 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0540 + 29852109-29852195,29852304-29852477,29852585-298528... 29 1.0
09_06_0183 - 21406474-21406636,21407412-21407956 27 5.5
12_02_0126 + 13958247-13958298,13958422-13958972,13959076-13960047 27 7.2
12_01_0371 - 2851186-2851491,2851582-2851765,2851967-2852156,285... 27 7.2
07_03_1436 - 26543846-26546806 27 7.2
05_04_0272 + 19624898-19625071,19625909-19626370,19626471-196269... 27 7.2
02_01_0148 - 1051121-1051192,1051378-1051512,1052343-1052396,105... 27 7.2
12_02_1070 - 25814741-25815850 26 9.5
02_04_0414 - 22685981-22686178,22686374-22686465,22686580-226866... 26 9.5
>02_05_0540 +
29852109-29852195,29852304-29852477,29852585-29852841,
29852954-29853125,29853513-29853551,29853647-29853715,
29853795-29853911,29854190-29854401,29854578-29854736,
29854810-29855009,29855100-29855266,29855346-29855442,
29855560-29855651,29855861-29856139
Length = 706
Score = 29.5 bits (63), Expect = 1.0
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Frame = +2
Query: 194 KKTFTAWCNSHLRKAG--TGIENIEDDFRNGLKLMLLLEVIXGETLPK 331
+K W N HL+KAG + N D ++G LL+ + E P+
Sbjct: 277 EKMLLRWMNHHLKKAGYKKTVSNFSTDVKDGEAYAYLLKALAPEHSPE 324
>09_06_0183 - 21406474-21406636,21407412-21407956
Length = 235
Score = 27.1 bits (57), Expect = 5.5
Identities = 18/49 (36%), Positives = 25/49 (51%)
Frame = +1
Query: 244 RHREHRGRLPQWXEAHVAAGGHLRRDSAQARPWQNAIPQNR*RQQGTRL 390
R RE +GR Q + A+G R + Q P + PQ+ R +GTRL
Sbjct: 185 RRREKKGRRMQEEKRVEASGSFSRSLATQVGPSPDRWPQS--RNRGTRL 231
>12_02_0126 + 13958247-13958298,13958422-13958972,13959076-13960047
Length = 524
Score = 26.6 bits (56), Expect = 7.2
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = +2
Query: 341 GKMRFHKIANVNKALDFI 394
G MR HKI +V KAL F+
Sbjct: 71 GSMRGHKIESVKKALQFV 88
>12_01_0371 -
2851186-2851491,2851582-2851765,2851967-2852156,
2853375-2853613,2853862-2853947,2854720-2854827,
2854929-2855031,2855152-2855213
Length = 425
Score = 26.6 bits (56), Expect = 7.2
Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 4/64 (6%)
Frame = +2
Query: 176 AWEKXHKKTFTAWCNSHL-RKAGTGIENIE---DDFRNGLKLMLLLEVIXGETLPKPDRG 343
A E +K+TF A+ NS + K G+ DFR+ L+ L G L PD G
Sbjct: 141 AGEGSNKRTFEAFINSAVFSKDAEGVARKSMSLSDFRSWCILIPSLRKFLGSLLMPPDSG 200
Query: 344 KMRF 355
+ F
Sbjct: 201 RPGF 204
>07_03_1436 - 26543846-26546806
Length = 986
Score = 26.6 bits (56), Expect = 7.2
Identities = 24/86 (27%), Positives = 35/86 (40%), Gaps = 4/86 (4%)
Frame = +1
Query: 82 DNGVINNYDGLYPDGYMEQEVGVGA*GSPTPGLGETX*KDIHSXVQQSPQK--SWHRHRE 255
D+G ++N+D Y D YM GV + T + D Q++ ++ R R+
Sbjct: 174 DHGDLDNFDDSYEDNYMPLFFGVFMADNETEEQRQAREADQERTCQETERRRLEEERQRQ 233
Query: 256 HRGRL--PQWXEAHVAAGGHLRRDSA 327
R RL Q VA RR A
Sbjct: 234 ERERLQREQQDRERVAKEAEDRRQRA 259
>05_04_0272 +
19624898-19625071,19625909-19626370,19626471-19626905,
19626992-19627237,19627318-19628085,19628245-19628417,
19629337-19629440,19629525-19630127,19630210-19630214
Length = 989
Score = 26.6 bits (56), Expect = 7.2
Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 5/55 (9%)
Frame = +2
Query: 221 SHLRKAGTGIENIEDDFR-----NGLKLMLLLEVIXGETLPKPDRGKMRFHKIAN 370
+H KAG I D R NGL+ LLLE I + P ++ K+AN
Sbjct: 773 AHGSKAGFPISGFYSDMRKMQNMNGLEGQLLLEPITNDLQPMEKCNSVQSPKVAN 827
>02_01_0148 -
1051121-1051192,1051378-1051512,1052343-1052396,
1052501-1052581,1052667-1052826,1053346-1053453,
1053543-1053718,1053952-1054002,1054154-1054264,
1054493-1054547,1055667-1055789,1055922-1056007,
1056235-1056349,1056429-1056667
Length = 521
Score = 26.6 bits (56), Expect = 7.2
Identities = 14/37 (37%), Positives = 16/37 (43%)
Frame = +1
Query: 175 GLGETX*KDIHSXVQQSPQKSWHRHREHRGRLPQWXE 285
GL T KD H + + QK WHR R Q E
Sbjct: 454 GLRPTIPKDTHPKLSELLQKCWHRDPAERPDFSQILE 490
>12_02_1070 - 25814741-25815850
Length = 369
Score = 26.2 bits (55), Expect = 9.5
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -1
Query: 136 VPCNRPGTTRHSCLSPRCPS 77
VP + P TT+H L+P PS
Sbjct: 202 VPADEPDTTKHDKLTPPSPS 221
>02_04_0414 -
22685981-22686178,22686374-22686465,22686580-22686676,
22686801-22686916,22687314-22687513,22687588-22687740,
22687960-22688171,22688403-22688519,22688613-22688687,
22688815-22688853,22689518-22689689,22689809-22690056,
22690151-22690324,22690418-22690504
Length = 659
Score = 26.2 bits (55), Expect = 9.5
Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Frame = +2
Query: 197 KTFTAWCNSHLRKAG--TGIENIEDDFRNGLKLMLLLEVIXGE 319
K W N HL+KAG + N D ++G LL + E
Sbjct: 277 KMLLKWMNFHLKKAGYKKTVTNFSTDVKDGEAYAYLLNTLAPE 319
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,172,960
Number of Sequences: 37544
Number of extensions: 203007
Number of successful extensions: 567
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 561
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 567
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 682720236
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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