Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31677
(400 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_57099| Best HMM Match : No HMM Matches (HMM E-Value=.) 66 1e-11
SB_29854| Best HMM Match : No HMM Matches (HMM E-Value=.) 59 2e-09
SB_59115| Best HMM Match : Spectrin (HMM E-Value=0) 57 5e-09
SB_40303| Best HMM Match : CH (HMM E-Value=5.1e-10) 56 8e-09
SB_38289| Best HMM Match : No HMM Matches (HMM E-Value=.) 56 8e-09
SB_59804| Best HMM Match : No HMM Matches (HMM E-Value=.) 45 3e-05
SB_45261| Best HMM Match : No HMM Matches (HMM E-Value=.) 45 3e-05
SB_30962| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 3e-04
SB_2820| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 4e-04
SB_18386| Best HMM Match : CH (HMM E-Value=2.8e-26) 34 0.049
SB_46249| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.8
SB_45214| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.8
SB_887| Best HMM Match : SCP (HMM E-Value=7.1e-25) 26 9.8
SB_18754| Best HMM Match : GYR (HMM E-Value=1.5) 26 9.8
>SB_57099| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2509
Score = 66.1 bits (154), Expect = 1e-11
Identities = 31/67 (46%), Positives = 45/67 (67%)
Frame = +2
Query: 194 KKTFTAWCNSHLRKAGTGIENIEDDFRNGLKLMLLLEVIXGETLPKPDRGKMRFHKIANV 373
KKTFT W N+ L K G I ++ ++ R+G L+LLLEV+ LP+ +RG +RFH + NV
Sbjct: 40 KKTFTKWVNNRLLKVGVRILDLYEELRDGENLLLLLEVLCNVKLPR-ERGLLRFHMLQNV 98
Query: 374 NKALDFI 394
AL+F+
Sbjct: 99 QTALEFL 105
>SB_29854| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3235
Score = 58.8 bits (136), Expect = 2e-09
Identities = 28/73 (38%), Positives = 46/73 (63%), Gaps = 1/73 (1%)
Frame = +2
Query: 179 WEKXHKKTFTAWCNSHLRKAGTGIENIEDDFRNGLKLMLLLEVIXGETLPKPDRGKM-RF 355
W+K + TFT WCN HL+ + ++E D +GLKL+ LL+V+ + LP+ ++ + +
Sbjct: 370 WKKIQQNTFTRWCNEHLKCVKQFVYSLETDLCDGLKLIALLQVLSQKRLPRFNKKPVFKS 429
Query: 356 HKIANVNKALDFI 394
KI NV+ +L FI
Sbjct: 430 QKIENVSISLKFI 442
>SB_59115| Best HMM Match : Spectrin (HMM E-Value=0)
Length = 1457
Score = 57.2 bits (132), Expect = 5e-09
Identities = 29/70 (41%), Positives = 43/70 (61%), Gaps = 2/70 (2%)
Frame = +2
Query: 182 EKXHKKTFTAWCNSHLRKAGTGIE--NIEDDFRNGLKLMLLLEVIXGETLPKPDRGKMRF 355
E KKTFT W N L +AG + ++ +D ++G L+ LLEV+ G+ + K +RG MR
Sbjct: 24 EGTQKKTFTKWINIQLSRAGNNVRVGDLFNDLKDGTILIALLEVLTGKKI-KRERGNMRL 82
Query: 356 HKIANVNKAL 385
H + NVN A+
Sbjct: 83 HHLNNVNNAM 92
>SB_40303| Best HMM Match : CH (HMM E-Value=5.1e-10)
Length = 82
Score = 56.4 bits (130), Expect = 8e-09
Identities = 24/48 (50%), Positives = 33/48 (68%)
Frame = +2
Query: 182 EKXHKKTFTAWCNSHLRKAGTGIENIEDDFRNGLKLMLLLEVIXGETL 325
E+ KKTFT W NSHL++ G + + D ++G KL+LLLEV+ GE L
Sbjct: 4 ERVQKKTFTKWINSHLQRVGARVNELYHDLQDGRKLILLLEVLSGEKL 51
>SB_38289| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 560
Score = 56.4 bits (130), Expect = 8e-09
Identities = 24/48 (50%), Positives = 33/48 (68%)
Frame = +2
Query: 182 EKXHKKTFTAWCNSHLRKAGTGIENIEDDFRNGLKLMLLLEVIXGETL 325
E+ KKTFT W NSHL++ G + + D ++G KL+LLLEV+ GE L
Sbjct: 40 ERVQKKTFTKWINSHLQRVGARVNELYHDLQDGRKLILLLEVLSGEKL 87
>SB_59804| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 676
Score = 44.8 bits (101), Expect = 3e-05
Identities = 20/44 (45%), Positives = 29/44 (65%)
Frame = +2
Query: 194 KKTFTAWCNSHLRKAGTGIENIEDDFRNGLKLMLLLEVIXGETL 325
KKTFT W NS L K+G + ++ +D +G L+ LLE+I GE +
Sbjct: 53 KKTFTKWVNSFLDKSGLHVNDLFEDLADGKILISLLEIISGEKI 96
>SB_45261| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 98
Score = 44.8 bits (101), Expect = 3e-05
Identities = 22/45 (48%), Positives = 30/45 (66%), Gaps = 2/45 (4%)
Frame = +2
Query: 182 EKXHKKTFTAWCNSHLRKAGTGIE--NIEDDFRNGLKLMLLLEVI 310
E+ HKK FT W NS L +A IE N++ DF +G+ L+ LLEV+
Sbjct: 27 EEVHKKAFTKWVNSRLAQADPPIEIKNLDRDFCDGIALLSLLEVL 71
>SB_30962| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 733
Score = 41.1 bits (92), Expect = 3e-04
Identities = 22/69 (31%), Positives = 38/69 (55%), Gaps = 2/69 (2%)
Frame = +2
Query: 197 KTFTAWCNSHLRK--AGTGIENIEDDFRNGLKLMLLLEVIXGETLPKPDRGKMRFHKIAN 370
+ +TAW NS L+K I+N+ D ++G+ + L+EV+ GE+L + N
Sbjct: 131 QAYTAWVNSQLKKRPGSRVIQNLPIDMKDGVAFIQLIEVVAGESLHLNENPTSMAAMKDN 190
Query: 371 VNKALDFIA 397
V++ L F+A
Sbjct: 191 VDQVLQFMA 199
>SB_2820| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1140
Score = 40.7 bits (91), Expect = 4e-04
Identities = 22/74 (29%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Frame = +2
Query: 179 WEKXHKKTFTAWCNSHLRKAGTGIENIEDDFRNGLKLMLLLEVIXGETLPKPDRGKMRF- 355
W + K TFT WCN +R++G I ++ F +G+ ++ L+E + E K + +F
Sbjct: 38 WIEIQKNTFTNWCNEQIRESGIVITDLAIAFNDGVTIVYLVESV-AEKKCKNCKMNPKFV 96
Query: 356 -HKIANVNKALDFI 394
K+ N +AL +
Sbjct: 97 QDKLENTTQALKLL 110
>SB_18386| Best HMM Match : CH (HMM E-Value=2.8e-26)
Length = 589
Score = 33.9 bits (74), Expect = 0.049
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Frame = +2
Query: 182 EKXHKKTFTAWCNSHLRKAGT---GIENIEDDFRNGLKLMLLLEVIXGETL 325
E H+K FT W NS L T I+++ D ++G L+ LLEV+ + L
Sbjct: 116 ENAHRKAFTKWVNSKLADHPTEPCTIKDVVTDLQDGRMLLNLLEVLTRKKL 166
>SB_46249| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 834
Score = 26.2 bits (55), Expect = 9.8
Identities = 16/35 (45%), Positives = 20/35 (57%)
Frame = -2
Query: 336 SGLGRVSPXMTSSSNMSFXPLRKSSSMFSMPVPAF 232
S L R SP SSS PL KSSS++ + VP +
Sbjct: 659 SSLYRSSPLCKSSSLYKSSPLYKSSSLYEI-VPLY 692
>SB_45214| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 196
Score = 26.2 bits (55), Expect = 9.8
Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Frame = +2
Query: 164 LLHPAWEKXHKKTFTAWCNSHL-RKAGTGIENIEDDFRN 277
LLH W+K F A C L RK I + D F++
Sbjct: 145 LLHQMWKKAVSDNFCALCGQKLSRKIEPYIVQVVDSFKD 183
>SB_887| Best HMM Match : SCP (HMM E-Value=7.1e-25)
Length = 147
Score = 26.2 bits (55), Expect = 9.8
Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Frame = +1
Query: 199 DIHSXVQ---QSPQKSWHRHREHRGRLPQWXEAHVAAGGHLRRDSAQARPWQ 345
D+H+ ++ Q+P+ +W ++ W H+A G L SA +RP Q
Sbjct: 10 DVHNELRAKHQAPKVTWSAQLAADAQV--WAN-HIAKNGRLEHSSADSRPGQ 58
>SB_18754| Best HMM Match : GYR (HMM E-Value=1.5)
Length = 454
Score = 26.2 bits (55), Expect = 9.8
Identities = 21/51 (41%), Positives = 25/51 (49%)
Frame = -3
Query: 161 PHAPTPTSCSM*PSGYNPS*LFITPLSIIHGHRTDRRFDVRSSX*PRTRVC 9
P PTPT S PS + L IT LS +R + +RSS R RVC
Sbjct: 73 PSGPTPTEESTPPSDTWLTDLIITALS--KENREEMVATLRSSARLRKRVC 121
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,470,991
Number of Sequences: 59808
Number of extensions: 208473
Number of successful extensions: 534
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 497
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 531
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 703143849
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -