Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31677
         (400 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       25   0.42 
AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    22   2.2  
DQ435338-1|ABD92653.1|  135|Apis mellifera OBP21 protein.              22   3.0  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   3.9  
EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...    21   5.2  
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    21   5.2  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    21   5.2  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 24.6 bits (51), Expect = 0.42
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = -3

Query: 182 PRPGVGDPHAPTPTSCSM*PSGYNPS*LFITPLSIIH 72
           P P  G P    P +    P   NPS + I+P S IH
Sbjct: 40  PNPSQGPPPGGPPGA----PPSQNPSQMMISPASGIH 72


>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 22.2 bits (45), Expect = 2.2
 Identities = 9/14 (64%), Positives = 9/14 (64%), Gaps = 2/14 (14%)
 Frame = +2

Query: 197 KTFTAWCN--SHLR 232
           KTF  WCN   HLR
Sbjct: 215 KTFLVWCNEEDHLR 228


>DQ435338-1|ABD92653.1|  135|Apis mellifera OBP21 protein.
          Length = 135

 Score = 21.8 bits (44), Expect = 3.0
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +2

Query: 251 ENIEDDFRNGL 283
           E  EDDFRNG+
Sbjct: 41  EKKEDDFRNGI 51


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 3.9
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +2

Query: 239 GTGIENIEDDFRNGLKLMLLLEV 307
           G+GIE+I++   NGL  + +L +
Sbjct: 827 GSGIESIQNRTFNGLNNLQILHL 849


>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score = 21.0 bits (42), Expect = 5.2
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -3

Query: 119 GYNPS*LFITPLSIIHG 69
           GYNP+ +   P+S  HG
Sbjct: 109 GYNPAAVAFVPISGWHG 125


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 21.0 bits (42), Expect = 5.2
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -3

Query: 119 GYNPS*LFITPLSIIHG 69
           GYNP+ +   P+S  HG
Sbjct: 125 GYNPAAVAFVPISGWHG 141


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 5.2
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -3

Query: 119 GYNPS*LFITPLSIIHG 69
           GYNP+ +   P+S  HG
Sbjct: 182 GYNPAAVAFVPISGWHG 198


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,837
Number of Sequences: 438
Number of extensions: 1760
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9885360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)