Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31677
         (400 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g35700.1 68418.m04269 fimbrin-like protein, putative similar ...    28   2.6  
At2g04750.1 68415.m00485 fimbrin-like protein, putative similar ...    27   4.6  
At4g13950.1 68417.m02158 rapid alkalinization factor (RALF) fami...    26   8.0  

>At5g35700.1 68418.m04269 fimbrin-like protein, putative similar to
           fimbrin-like protein (ATFIM1) [Arabidopsis thaliana]
           GI:2905893, fimbrin [Schizosaccharomyces pombe]
           GI:3057144; contains Pfam profile PF00307: Calponin
           homology (CH) domain
          Length = 687

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
 Frame = +2

Query: 194 KKTFTAWCNSHLRKAG--TGIENIEDDFRNGLKLMLLLEVIXGE 319
           +K    W N HL+KAG    + N   D ++G     LL  +  E
Sbjct: 270 EKVLLKWMNFHLKKAGYEKQVTNFSSDLKDGEAYAYLLNALAPE 313


>At2g04750.1 68415.m00485 fimbrin-like protein, putative similar to
           fimbrin-like protein (ATFIM1) [Arabidopsis thaliana]
           GI:2905893; contains Pfam profile PF00307: Calponin
           homology (CH) domain
          Length = 652

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
 Frame = +2

Query: 194 KKTFTAWCNSHLRKAG--TGIENIEDDFRNGLKLMLLLEVIXGE 319
           +K    W N HL+KAG    + N   D ++G     LL  +  E
Sbjct: 264 EKLLLKWMNFHLKKAGYEKQVTNFSSDVKDGEAYAYLLNALAPE 307


>At4g13950.1 68417.m02158 rapid alkalinization factor (RALF) family
           protein similar to RALF precursor [Nicotiana tabacum]
           GI:16566316
          Length = 113

 Score = 26.2 bits (55), Expect = 8.0
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -1

Query: 136 VPCNRPGTTRHSCLSPRCPSY 74
           VPC +PG + + C S +  SY
Sbjct: 74  VPCQKPGASYYDCRSGQANSY 94


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,780,615
Number of Sequences: 28952
Number of extensions: 147102
Number of successful extensions: 396
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 384
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 396
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 575830496
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)