Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31676
         (516 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,287...    29   2.2  
02_04_0271 + 21445113-21445865,21446727-21446788,21446927-214470...    28   3.9  
04_03_0024 - 9623178-9624001,9624502-9624678,9625144-9625305,962...    28   5.1  
06_01_1181 + 10148653-10149405                                         27   6.8  
10_08_0739 + 20217842-20218852                                         27   8.9  
06_01_0875 + 6707483-6709394,6709750-6709829,6710077-6710174,671...    27   8.9  
02_03_0138 - 15629421-15629440,15629521-15629752,15630115-156303...    27   8.9  

>05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,
            2879715-2879973,2880060-2880346,2880423-2880758,
            2880862-2881003,2881077-2881297,2881379-2881540,
            2881617-2881775,2881860-2882159,2882834-2883097,
            2883133-2883243,2883902-2883988
          Length = 1871

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 22/70 (31%), Positives = 28/70 (40%)
 Frame = +2

Query: 221  YRPTRRSVFPELLSTYPYSKSIYDDPIAAAERITVPGYRYLPVHREIYGYSPRPIYAHNY 400
            Y PT  +  P   S  P S S    P + +   T P Y Y P       YSP    ++NY
Sbjct: 1683 YNPTSSAYSPTSPSYNPTSPSYSYSPTSPSYSPTSPSYSYSPTSP---SYSPTS-PSYNY 1738

Query: 401  PRSLDYYRPT 430
              +   Y PT
Sbjct: 1739 SPTSPSYSPT 1748


>02_04_0271 +
           21445113-21445865,21446727-21446788,21446927-21447027,
           21447165-21447248,21448054-21448058,21448193-21448267,
           21448339-21448416,21448896-21448952,21449351-21449421,
           21449529-21449628,21449758-21449862,21450004-21450066,
           21450144-21450266,21450371-21450514,21450598-21450672
          Length = 631

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 16/38 (42%), Positives = 19/38 (50%)
 Frame = +3

Query: 3   GPTLDVGSSTTPHYPI*LRPLFNRIRARHRPPKCSKHI 116
           GPT    SS+  H P        RIRA    P+CSKH+
Sbjct: 47  GPTSSSSSSSDEHEP-------RRIRAEAHCPRCSKHM 77


>04_03_0024 -
           9623178-9624001,9624502-9624678,9625144-9625305,
           9625520-9626032,9626801-9629153
          Length = 1342

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
 Frame = +1

Query: 184 SKRFGRHQSRGKVQANTPQR-FSRTPVDLPLLQV-DLRRPYRCR 309
           SKR  +HQ+R      T +R F R PV LP  ++  +R P + +
Sbjct: 759 SKRIYKHQNRNNNNIRTKKRYFLRRPVRLPFKEILGIRIPVKVK 802


>06_01_1181 + 10148653-10149405
          Length = 250

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 10/36 (27%), Positives = 17/36 (47%)
 Frame = +2

Query: 332 YRYLPVHREIYGYSPRPIYAHNYPRSLDYYRPTRKV 439
           +RY+ VH  +Y     P+  + YP ++    P   V
Sbjct: 155 FRYVQVHHPVYAAPGEPVQGYGYPVAMSSALPAPHV 190


>10_08_0739 + 20217842-20218852
          Length = 336

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 18/59 (30%), Positives = 23/59 (38%)
 Frame = +1

Query: 235 PQRFSRTPVDLPLLQVDLRRPYRCR*EDYGTRLPLPACPSRDLRLLPAPYLCPQLPSLS 411
           P   S     LP     +  P+R          PLP  PS  L L+P+    P LP L+
Sbjct: 26  PSLISHLGAGLPAFAAGIHCPHR-------VSFPLPTAPSASLLLMPSWSAHPSLPYLA 77


>06_01_0875 +
           6707483-6709394,6709750-6709829,6710077-6710174,
           6710704-6710840,6710961-6711301,6711402-6711599
          Length = 921

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -3

Query: 178 HEGLPKSGFLRRRLVSANHV*MCFEHFGGLCRARIRLN 65
           H  L + GF  R +VS N + +C+   G +C AR   N
Sbjct: 227 HNMLKRKGF-ERNVVSWNSMMICYIKAGDVCSARALFN 263


>02_03_0138 -
           15629421-15629440,15629521-15629752,15630115-15630348,
           15630486-15630709,15631225-15631509,15631549-15631690
          Length = 378

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = +2

Query: 134 NETPSKKARFWQSFVRSLKGSEDIRAEER 220
           +E  +++   WQ+F+  +KG E+   EE+
Sbjct: 135 HELATRQVECWQAFLSPMKGKEEDEGEEK 163


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,305,135
Number of Sequences: 37544
Number of extensions: 292031
Number of successful extensions: 945
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 920
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 945
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)