Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31676
         (516 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_36169| Best HMM Match : DUF676 (HMM E-Value=0)                      31   0.74 
SB_46179| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.98 
SB_50240| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_27891| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_23337| Best HMM Match : Ank (HMM E-Value=5.1e-07)                   28   5.3  
SB_20837| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.9  
SB_31811| Best HMM Match : Keratin_B2 (HMM E-Value=0.029)              27   6.9  
SB_40486| Best HMM Match : C2 (HMM E-Value=2.9e-05)                    27   9.2  

>SB_36169| Best HMM Match : DUF676 (HMM E-Value=0)
          Length = 2442

 Score = 30.7 bits (66), Expect = 0.74
 Identities = 18/56 (32%), Positives = 26/56 (46%)
 Frame = +3

Query: 273  TPSRFTTTLSLPLRGLRYPATVTCLSIARSTATPRALSMPTTTLALSIITGQPEKF 440
            T +   T+ S P     + A  T  +I+ ST+TP A   P T  A+S  +  P  F
Sbjct: 2259 TTAEALTSTSTPFA---FGAATTTAAISTSTSTPFAFGAPATAAAVSTASSAPSAF 2311



 Score = 29.9 bits (64), Expect = 1.3
 Identities = 19/58 (32%), Positives = 24/58 (41%)
 Frame = +3

Query: 267  TLTPSRFTTTLSLPLRGLRYPATVTCLSIARSTATPRALSMPTTTLALSIITGQPEKF 440
            T T S  +   S+      + A  T      ST+TP A    TTT A+S  T  P  F
Sbjct: 2235 TATGSSTSVPQSIATAPFVFGAATTTAEALTSTSTPFAFGAATTTAAISTSTSTPFAF 2292


>SB_46179| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4856

 Score = 30.3 bits (65), Expect = 0.98
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = +1

Query: 127  WQKRDAVEESQILAVLRAFSKRFGRHQSRGKVQANTPQRFSRTPVDLP 270
            W+ RD+  +S I AVL    KR   ++ R K   N  ++FS      P
Sbjct: 4708 WKSRDSDSDSSIDAVLDEMEKRRAGYEDRRKSFENLKRKFSEPSCTSP 4755


>SB_50240| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 302

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = +1

Query: 139 DAVEESQILAVLRAFSKRFGRHQSRGKVQANTPQRFSRTPVDLPLL 276
           D  E+ +    +R F++ +GR   +  V+ANT +     P  L +L
Sbjct: 147 DETEDRRRAETMREFTREYGRGVRQANVRANTKKLTGTLPYSLSML 192


>SB_27891| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 609

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 15/47 (31%), Positives = 21/47 (44%)
 Frame = +3

Query: 270 LTPSRFTTTLSLPLRGLRYPATVTCLSIARSTATPRALSMPTTTLAL 410
           L P RF +   L  R  R+P  ++  S   ST   R  S P +  +L
Sbjct: 346 LNPKRFWSIFKLKSRDFRFPGIMSIGSAENSTQPARLASTPASIASL 392


>SB_23337| Best HMM Match : Ank (HMM E-Value=5.1e-07)
          Length = 213

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +1

Query: 217 KVQANTPQRFSRTPVDLPLLQVDLR 291
           KV AN P +F RTP+   +L+ D+R
Sbjct: 140 KVDANLPGQFGRTPLHNAVLKGDMR 164


>SB_20837| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1304

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 21/47 (44%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
 Frame = +3

Query: 288  TTTLSLPLRGL--RYPATVTCLSIARSTATPRALSMPT-TTLALSII 419
            TT  SLP   +    PATV+  SIA S  TP + S  T TTL  S++
Sbjct: 1169 TTIYSLPPTSMLNSTPATVSIDSIAPSPTTPPSSSSTTITTLNASVM 1215


>SB_31811| Best HMM Match : Keratin_B2 (HMM E-Value=0.029)
          Length = 138

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
 Frame = +3

Query: 255 SCRPTLTPSRFTTTLSLPLRGLRYPATVTC--LSIAR--STATPRAL 383
           SCRP       ++    PL  +RY ++ TC  L +AR  S+AT R L
Sbjct: 61  SCRPLHVVRYMSSATCRPLHVVRYMSSATCRPLHVARFMSSATCRTL 107


>SB_40486| Best HMM Match : C2 (HMM E-Value=2.9e-05)
          Length = 698

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = +1

Query: 172 LRAFSKRFGRHQSRG-KVQANTPQRFSRTPVDLPLLQVDLRRPYRCR 309
           L+ +SKRFGR  +RG +V+       +R+ +   L+ VD+    +CR
Sbjct: 118 LQRYSKRFGRADTRGIRVKNMLHGTGTRSIIRYTLMYVDVLVSAQCR 164


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,349,799
Number of Sequences: 59808
Number of extensions: 332800
Number of successful extensions: 1133
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 962
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1122
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)